View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0711_low_16 (Length: 333)

Name: NF0711_low_16
Description: NF0711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0711_low_16
NF0711_low_16
[»] chr7 (6 HSPs)
chr7 (131-201)||(10092352-10092422)
chr7 (139-242)||(46169318-46169421)
chr7 (161-242)||(46164428-46164509)
chr7 (161-201)||(41097664-41097704)
chr7 (139-247)||(46513554-46513658)
chr7 (141-201)||(46510789-46510849)
[»] chr1 (5 HSPs)
chr1 (139-242)||(48990904-48991007)
chr1 (139-242)||(25491998-25492101)
chr1 (132-242)||(52432973-52433083)
chr1 (139-242)||(48985991-48986094)
chr1 (161-242)||(19880733-19880813)
[»] chr5 (8 HSPs)
chr5 (132-201)||(8740441-8740510)
chr5 (132-201)||(8740575-8740644)
chr5 (137-201)||(6596904-6596968)
chr5 (132-201)||(17370067-17370135)
chr5 (161-198)||(21632565-21632602)
chr5 (161-198)||(21640812-21640849)
chr5 (132-201)||(31193965-31194033)
chr5 (132-201)||(31194198-31194266)
[»] chr4 (6 HSPs)
chr4 (130-201)||(22536910-22536981)
chr4 (211-247)||(55203369-55203405)
chr4 (141-239)||(1856676-1856773)
chr4 (131-201)||(50348189-50348259)
chr4 (172-245)||(10032286-10032359)
chr4 (138-201)||(55205932-55205995)
[»] chr3 (3 HSPs)
chr3 (141-248)||(34373959-34374066)
chr3 (212-248)||(34374785-34374821)
chr3 (140-201)||(12772484-12772545)
[»] scaffold0060 (1 HSPs)
scaffold0060 (161-242)||(11139-11221)
[»] chr6 (1 HSPs)
chr6 (139-245)||(6356377-6356483)
[»] chr2 (1 HSPs)
chr2 (132-178)||(41993372-41993417)


Alignment Details
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 10092422 - 10092352
Alignment:
Q  131 ggagttcgggtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtg 201  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10092422 ggagtgcgggtatgctccatttaccatcagctccatttaccccatttaaggtcttggatgaatgacatgtg 10092352  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 46169421 - 46169318
Alignment:
Q  139 ggtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtgtnnnnnnnngattcaatggttcagattaaaaataaac 238  Q
    |||||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||||         ||||||||| ||||||||||||||||||    
T  46169421 ggtatgctccatttaccaccagctccatttaccccatttagggtcttggatgagtgacatgtggcaaaaatggattcaatgattcagattaaaaataaac 46169322  T
Q  239 aaaa 242  Q
    ||||    
T  46169321 aaaa 46169318  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 46164428 - 46164509
Alignment:
Q  161 ctccatttaccccatttaaggtcttggatgaatgacatgtgtnnnnnnnngattcaatggttcagattaaaaataaacaaaa 242  Q
    |||||||||||||||||| |||||||||||| |||||||||         ||||||||||||||||||||||||||||||||    
T  46164428 ctccatttaccccatttagggtcttggatgagtgacatgtggcaaaaatggattcaatggttcagattaaaaataaacaaaa 46164509  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 41097704 - 41097664
Alignment:
Q  161 ctccatttaccccatttaaggtcttggatgaatgacatgtg 201  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  41097704 ctccatttaccccatttaagatcttggatgaatgacatgtg 41097664  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 247
Target Start/End: Complemental strand, 46513658 - 46513554
Alignment:
Q  139 ggtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtgtnnnnnnnngattcaatggttcagattaaaaataaac 238  Q
    ||||||||| ||||||||||| ||| |||||||| ||||| || ||||||||||||||| |||         |||    |||||||||||||||||||||    
T  46513658 ggtatgctcgatttaccatcagctctatttacccaatttagggacttggatgaatgacacgtggaaaaaaaggat----tggttcagattaaaaataaac 46513563  T
Q  239 aaaacatca 247  Q
    |||||||||    
T  46513562 aaaacatca 46513554  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 46510789 - 46510849
Alignment:
Q  141 tatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtg 201  Q
    ||||||| ||||||||||||||| ||||| | |||||| | | ||||||||||||||||||    
T  46510789 tatgctctatttaccatcaactctatttatctcatttaggattttggatgaatgacatgtg 46510849  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 48991007 - 48990904
Alignment:
Q  139 ggtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtgtnnnnnnnngattcaatggttcagattaaaaataaac 238  Q
    |||||||||||||||||| || |||||||||||||||||| |||||||||||| |||||||||         ||||||||||||||||||||||||||||    
T  48991007 ggtatgctccatttaccaccagctccatttaccccatttagggtcttggatgagtgacatgtggcaaaaatggattcaatggttcagattaaaaataaac 48990908  T
Q  239 aaaa 242  Q
    ||||    
T  48990907 aaaa 48990904  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 25492101 - 25491998
Alignment:
Q  139 ggtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtgtnnnnnnnngattcaatggttcagattaaaaataaac 238  Q
    |||||||||||||||||| ||||||||| ||||||||||| |||||||||||| ||| |||||         ||||||||||||||||||||||||||||    
T  25492101 ggtatgctccatttaccaccaactccatataccccatttagggtcttggatgagtgatatgtggcaaaaatggattcaatggttcagattaaaaataaac 25492002  T
Q  239 aaaa 242  Q
    ||||    
T  25492001 aaaa 25491998  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 242
Target Start/End: Original strand, 52432973 - 52433083
Alignment:
Q  132 gagttcgggtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtgtnnnnnnnngattcaatggttcagattaaa 231  Q
    |||| ||||||||||||||||||||||| ||  |||||||||||||| |||||||||||||||||| |||          ||||||||||||||||||||    
T  52432973 gagtccgggtatgctccatttaccatcagctttatttaccccatttagggtcttggatgaatgacacgtggcacaaatgaattcaatggttcagattaaa 52433072  T
Q  232 aataaacaaaa 242  Q
    |||||||||||    
T  52433073 aataaacaaaa 52433083  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 48985991 - 48986094
Alignment:
Q  139 ggtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtgtnnnnnnnngattcaatggttcagattaaaaataaac 238  Q
    |||||||||||||||||| || ||||||||||| |||||| |||||||||||| |||||||||         ||||||||| ||||||||||||||||||    
T  48985991 ggtatgctccatttaccaccagctccatttacctcatttagggtcttggatgagtgacatgtggcaaaaatggattcaatgattcagattaaaaataaac 48986090  T
Q  239 aaaa 242  Q
    ||||    
T  48986091 aaaa 48986094  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 19880813 - 19880733
Alignment:
Q  161 ctccatttaccccatttaaggtcttggatgaatgacatgtgtnnnnnnnngattcaatggttcagattaaaaataaacaaaa 242  Q
    |||||||||||||||||| |||||||||||| ||||| |||         |||||||||||| |||||||||| ||||||||    
T  19880813 ctccatttaccccatttagggtcttggatgactgacaagtggcaaaaatggattcaatggttaagattaaaaa-aaacaaaa 19880733  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 8740441 - 8740510
Alignment:
Q  132 gagttcgggtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtg 201  Q
    |||| ||||||||||| |||||||||   |||||||||||||||||| ||| ||||||||||||||||||    
T  8740441 gagtccgggtatgctcaatttaccatatgctccatttaccccatttagggtattggatgaatgacatgtg 8740510  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 8740644 - 8740575
Alignment:
Q  132 gagttcgggtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtg 201  Q
    |||||| |||||| | ||||||||||   ||||||||| |||||||||||||||||||||||||||||||    
T  8740644 gagttcaggtatgtttcatttaccatatgctccatttatcccatttaaggtcttggatgaatgacatgtg 8740575  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 6596968 - 6596904
Alignment:
Q  137 cgggtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtg 201  Q
    |||||||||||| ||||||||   |||||||||||  ||||||||||||||||||||||||||||    
T  6596968 cgggtatgctccgtttaccataggctccatttaccatatttaaggtcttggatgaatgacatgtg 6596904  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 17370067 - 17370135
Alignment:
Q  132 gagttcgggtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtg 201  Q
    ||||||||||||||||||||||   | |||||||||||| ||||||| ||| ||||||| | ||||||||    
T  17370067 gagttcgggtatgctccatttatgctaaactccatttactccatttagggt-ttggatgcaagacatgtg 17370135  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 21632565 - 21632602
Alignment:
Q  161 ctccatttaccccatttaaggtcttggatgaatgacat 198  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  21632565 ctccatttaccccatttagggtcatggatgaatgacat 21632602  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 21640812 - 21640849
Alignment:
Q  161 ctccatttaccccatttaaggtcttggatgaatgacat 198  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  21640812 ctccatttaccccatttagggtcatggatgaatgacat 21640849  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 31193965 - 31194033
Alignment:
Q  132 gagttcgggtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtg 201  Q
    ||||||||||||||||||||||   | | |||||||||| ||||||||||| ||||||| | ||||||||    
T  31193965 gagttcgggtatgctccatttaggctaagctccatttactccatttaaggt-ttggatgcaagacatgtg 31194033  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 31194266 - 31194198
Alignment:
Q  132 gagttcgggtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtg 201  Q
    ||||||||||||||||||||||   | | |||||||||| ||||||||||| ||||||| | ||||||||    
T  31194266 gagttcgggtatgctccatttaggctaagctccatttactccatttaaggt-ttggatgcaagacatgtg 31194198  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 22536981 - 22536910
Alignment:
Q  130 tggagttcgggtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtg 201  Q
    |||||| | |||||||| ||||||||||   |||||||||||||||||| ||| ||||||||||||||||||    
T  22536981 tggagtcccggtatgcttcatttaccatatgctccatttaccccatttagggtgttggatgaatgacatgtg 22536910  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 55203369 - 55203405
Alignment:
Q  211 gattcaatggttcagattaaaaataaacaaaacatca 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  55203369 gattcaatggttcagattaaaaataaacaaaacatca 55203405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 1856773 - 1856676
Alignment:
Q  141 tatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtgtnnnnnnnngattcaatggttcagattaaaaataaaca 239  Q
    ||||||||||||||||     ||||||||| ||||||| ||||||||||||||||||||||         |||||||||||||||||| ||||||||||    
T  1856773 tatgctccatttaccacatgttccatttacaccattta-ggtcttggatgaatgacatgtggcaaaaaaggattcaatggttcagatttaaaataaaca 1856676  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 50348259 - 50348189
Alignment:
Q  131 ggagttcgggtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtg 201  Q
    ||||||| ||||||||||||||||||    || ||||||| ||||||| ||| ||||||||||||||||||    
T  50348259 ggagttcaggtatgctccatttaccacatgcttcatttactccatttagggtattggatgaatgacatgtg 50348189  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 10032359 - 10032286
Alignment:
Q  172 ccatttaaggtcttggatgaatgacatgtgtnnnnnnnngattcaatggttcagattaaaaataaacaaaacat 245  Q
    ||||||| | ||||||||||||||||||||         ||||||||| |||||||||||||||||||||||||    
T  10032359 ccatttaggatcttggatgaatgacatgtgacaaaaaaggattcaatgattcagattaaaaataaacaaaacat 10032286  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 55205995 - 55205932
Alignment:
Q  138 gggtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtg 201  Q
    ||||||||| ||||||  |||| |||||||||||| ||||| | || |||||||||||||||||    
T  55205995 gggtatgcttcatttaatatcagctccatttaccctatttaggatcctggatgaatgacatgtg 55205932  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 248
Target Start/End: Original strand, 34373959 - 34374066
Alignment:
Q  141 tatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtgtnnnnnnnngattcaatggttcagattaaaaataaacaa 240  Q
    ||||||||||||||||||   |||||||| || |||||   ||||||||||||||||||||         |||||||||||| |||||||||||||| ||    
T  34373959 tatgctccatttaccatcggttccatttatccaatttagaatcttggatgaatgacatgtggcaaaaaatgattcaatggtttagattaaaaataaataa 34374058  T
Q  241 aacatcaa 248  Q
    ||||||||    
T  34374059 aacatcaa 34374066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 34374821 - 34374785
Alignment:
Q  212 attcaatggttcagattaaaaataaacaaaacatcaa 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  34374821 attcaatggttcagattaaaaataaacaaaacatcaa 34374785  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 12772484 - 12772545
Alignment:
Q  140 gtatgctccatttaccatcaactccatttaccccatttaaggtcttggatgaatgacatgtg 201  Q
    |||||||||||||||||| |  ||||||||| || |||| ||| ||| ||||||||||||||    
T  12772484 gtatgctccatttaccattagatccatttactccgtttatggtattgcatgaatgacatgtg 12772545  T

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Target: scaffold0060 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 11139 - 11221
Alignment:
Q  161 ctccatttaccccatttaaggtcttggatgaatgacatgt-gtnnnnnnnngattcaatggttcagattaaaaataaacaaaa 242  Q
    |||||||||||||||||| |||| |||||||||||||||| ||        |||||||||||||||||||||||||| |||||    
T  11139 ctccatttaccccatttagggtcatggatgaatgacatgtggtaaaaaaaggattcaatggttcagattaaaaataatcaaaa 11221  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 6356483 - 6356377
Alignment:
Q  139 ggtatgctccatttaccatcaact-ccatttaccccatttaaggtcttggatgaatgacatgtgtnnnnnnnngattcaatggttcagattaaaaataaa 237  Q
    |||||||||||||||||| ||  | ||||||||  |||||||||||||||||||||||||||||         |||||||| ||||||||| |||||||     
T  6356483 ggtatgctccatttacca-catgtcccatttactacatttaaggtcttggatgaatgacatgtggtaaaaatcgattcaattgttcagatttaaaataat 6356385  T
Q  238 caaaacat 245  Q
    ||||||||    
T  6356384 caaaacat 6356377  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 41993417 - 41993372
Alignment:
Q  132 gagttcgggtatgctccatttaccatcaactccatttaccccattta 178  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||    
T  41993417 gagttcgggtatgctccatttacc-ttaactccatttaccccattta 41993372  T

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