View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0711_low_17 (Length: 324)
Name: NF0711_low_17
Description: NF0711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0711_low_17 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 37 - 266
Target Start/End: Original strand, 240235 - 240461
Alignment:
| Q |
37 |
tcatgtaatcatgttgcatcaaatgaagaaggacggtccttggatattagaggatgcttgtgtatttgacttgatatgggtgnnnnnnngtatgtgtgtg |
136 |
Q |
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| T |
240235 |
tcatgtaatcatgttgcatcaaatggagaaggacggtccttggatattagaggatgcttgtgtatttgacttgatatgggtgtttttttgtatgtgtgtg |
240334 |
T |
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| Q |
137 |
gcatattttatgtgactatttttacttgcttatattgcatctaatcaaaacatgccaagtaattagttatagagatgttttagaaattaacctaaaaaag |
236 |
Q |
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| T |
240335 |
gcatatt--atgtgactatttt-acttacttatattgcatctaatcaaaacatgccaagtaattagttatagagatattttagaaattaacccaaaaaag |
240431 |
T |
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| Q |
237 |
tggtatcattgagtgcggtgtatacaaatt |
266 |
Q |
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| T |
240432 |
tggtatcattgagtgcggtgtatacaaatt |
240461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 240505 - 240561
Alignment:
| Q |
266 |
tttcacatttatggtttcacaagtcatagcggttttcaggtgtataaaaattaaatc |
322 |
Q |
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| T |
240505 |
tttcacatttatggtttcacaagtcatatcggttttccggtgtataaaaattaaatc |
240561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 44599522 - 44599484
Alignment:
| Q |
209 |
agatgttttagaaattaacctaaaaaagtggtatcattg |
247 |
Q |
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| T |
44599522 |
agatattttagaaattaacctaaagaagtggtatcattg |
44599484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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