View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0711_low_2 (Length: 579)
Name: NF0711_low_2
Description: NF0711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0711_low_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 103 - 546
Target Start/End: Original strand, 7038216 - 7038657
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
7038216 |
ttaatcaccgtatctactgctggaatatctagtcccctgctagctaagtcattacaaagaagaattttgcagttcccagacttgaacgcattcaaggctt |
7038315 |
T |
|
| Q |
203 |
caagtctctttgcctatnnnnnnntgtaattatattatgaattaggcatatttcttgttagcagtttagaacaaattacaattacaataaatgatctgca |
302 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
7038316 |
caagtctctttgcctataaaaaaacgtaattatattatgaattacgcatatttcttgttagcagtttaaaacaaattacaattacaataaaggatctgca |
7038415 |
T |
|
| Q |
303 |
atgcggtacaaatacctgactcataaaactattgattaggatgattttgaaaccagaatccctaagagtcaaagccagacgaagcaataaatcataagcc |
402 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
7038416 |
gtgcggtacaattacctgactcataaaaccattgattaggatgattttgaaaccagaat-----agagtcaaagccagacgaagcaataaatcataagcc |
7038510 |
T |
|
| Q |
403 |
caagtgaatactaatg---ttttaccagccatttgagagagagtgtgcgcaaggtagcaatcctatgcaagaagcatgcaattgatgaacaagatcagcg |
499 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
7038511 |
caagtgaatactaatgatgttttaccagccatttgagagagagtgtgcgcaaggtagcaatcctatgcaagaagcatgcaattgatgaacaagatcagtg |
7038610 |
T |
|
| Q |
500 |
caagcataaataataatagtttccggttcataacccaaaactaatgg |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7038611 |
caagcataaataataatagtttccggttcataacccaaaactaatgg |
7038657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 103 - 368
Target Start/End: Original strand, 7877186 - 7877452
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
7877186 |
ttaatcaccatatctattgctggaatatctagtcccctactagctacgtcattacaaaggagaattttgcagttcccagacttgaacgcattcaaggctt |
7877285 |
T |
|
| Q |
203 |
caagtctctttgcctatnnnnnnnt-gtaattatattatgaattaggcatatttcttgttagcagtttagaacaaattacaattacaataaatgatctgc |
301 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||| | ||| ||| |
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|
| T |
7877286 |
caagtctttttgcctataaaaaaaacgtaattatattaagaattaggcatatttcttattggcagtttagaacaaattacaattacaatacaggatttgc |
7877385 |
T |
|
| Q |
302 |
aatgcggtacaaatacctgactcataaaactattgattaggatgattttgaaaccagaatccctaag |
368 |
Q |
| |
|
| |||||||||| |||||||||||||| || ||||||||||||||||||||||||| |||||||||| |
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|
| T |
7877386 |
agtgcggtacaattacctgactcataagaccattgattaggatgattttgaaaccaaaatccctaag |
7877452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 363 - 546
Target Start/End: Original strand, 7880186 - 7880372
Alignment:
| Q |
363 |
cctaagagtcaaagccagacgaagcaataaatcataagcccaagtgaatac---taatgttttaccagccatttgagagagagtgtgcgcaaggtagcaa |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || || || |||||| | |||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
7880186 |
cctaagagtcaaagccagacgaagcaataaatcaaaacgccgagcgaataccaatgatgttttaccagccatttgagagagagtgtacgcaaggtagcaa |
7880285 |
T |
|
| Q |
460 |
tcctatgcaagaagcatgcaattgatgaacaagatcagcgcaagcataaataataatagtttccggttcataacccaaaactaatgg |
546 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7880286 |
tcctatgcaagaagcatgcaatggatgaacacgatcagcgcaagcataaataataatagtttccggttcataacccaaaactaatgg |
7880372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 103 - 286
Target Start/End: Original strand, 7315148 - 7315329
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| | ||| | | |||| ||||||||||||| ||||| | |||||||||||| |||||||||| | |
|
|
| T |
7315148 |
ttaatcaccatatctactgctggaatatctagtcccttactaacgaagtcactacaaaggagaatattgcactccccagacttcaatgcattcaaggatc |
7315247 |
T |
|
| Q |
203 |
caagtctctttgcctatnnnnnnntgtaattatattatgaattaggcatatttcttgttagcagtttagaacaaattacaatta |
286 |
Q |
| |
|
||||| ||||||||||| || ||| | ||| ||||||||||||||||||||| || |||||||| |||||||||||| |
|
|
| T |
7315248 |
caagtttctttgcctataaaaaa--gttattgtgttaagaattaggcatatttcttgttggcggtttagaagaaattacaatta |
7315329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 449 - 514
Target Start/End: Original strand, 1381979 - 1382044
Alignment:
| Q |
449 |
caaggtagcaatcctatgcaagaagcatgcaattgatgaacaagatcagcgcaagcataaataata |
514 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| ||||||| |
|
|
| T |
1381979 |
caaggtagcaatcctatgcaagaagcatggaattgatgaacacggtcagcgcaagcatgaataata |
1382044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 448 - 514
Target Start/End: Original strand, 7315497 - 7315563
Alignment:
| Q |
448 |
gcaaggtagcaatcctatgcaagaagcatgcaattgatgaacaagatcagcgcaagcataaataata |
514 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||| ||||||| |
|
|
| T |
7315497 |
gcaaggtaggaatcctatgcaagaagcatggaattgatgaacacggtcagcgcaagcatgaataata |
7315563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 103 - 291
Target Start/End: Original strand, 1381659 - 1381845
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||| | ||| | |||| ||||||||||||| ||| | | ||||||||| ||||||||||| | | |
|
|
| T |
1381659 |
ttaatcaccatatctaccgctggaatatctagtcccttactaaggaagtcactacaaaggagaatattgtactccccagacttgaacgcattcaatgatc |
1381758 |
T |
|
| Q |
203 |
caagtctctttgcctatnnnnnnntgtaattatattatgaattaggcatatttcttgttagcagtttagaacaaattacaattacaata |
291 |
Q |
| |
|
|||| ||||||||||| || ||||| | | ||||||||||||||||||||| | |||||||| |||||| ||||| |||| |
|
|
| T |
1381759 |
taagtttctttgcctataaaaaa--gttattatgtcaagaattaggcatatttcttgttgacggtttagaagaaattaaaattagaata |
1381845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 103 - 286
Target Start/End: Original strand, 29378328 - 29378511
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||| ||| || | ||| ||||||||||||| ||| | || |||||||| |||||||||| |||| |
|
|
| T |
29378328 |
ttaatcaccatatctaccgctggaatatctagtcccctcctagctgcttcactacaaaggagaatattgaactttccagacttgaacgcattcagggctc |
29378427 |
T |
|
| Q |
203 |
caagtctctttgcctatnnnnnnntgtaattatattatgaattaggcatatttcttgttagcagtttagaacaaattacaatta |
286 |
Q |
| |
|
| ||| ||||||||||| || || |||| | ||||||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
29378428 |
ctagtttctttgcctataaaaaaaagttatcatataaagaattaggcatatttcttgttggtggtttagaagaaattacaatta |
29378511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 449 - 522
Target Start/End: Original strand, 29378672 - 29378745
Alignment:
| Q |
449 |
caaggtagcaatcctatgcaagaagcatgcaattgatgaacaagatcagcgcaagcataaataataatagtttc |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
29378672 |
caaggtagcaatcctatgcaagaagcatgcaattgatgaacacaatcagtgaaagcataaataataatagtttc |
29378745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 30649083 - 30648972
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||| ||| |||||||| ||||||||||||| ||||| | ||||||||| ||| |||||||||| |
|
|
| T |
30649083 |
ttaatcaccatatctactgctggaatatccagtcccctactagctacgtcagtacaaaggagaatattgcaatccccagacttgaacttattcaaggctc |
30648984 |
T |
|
| Q |
203 |
caagtctctttg |
214 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
30648983 |
caagtcgctttg |
30648972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 20519509 - 20519620
Alignment:
| Q |
103 |
ttaatcaccgtatctactgctggaatatctagtcccctgctatctacgtcattacaaaggagaatgttgcagttcccagacttcaacgcattcaaggctt |
202 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||| ||||| | ||| ||||| ||| |||||||||| |
|
|
| T |
20519509 |
ttaatcaccatatctactgctgggatatccagtcccctgctagctacgtcagtacaaaggagaatattgcaatccccggacttgaacttattcaaggctc |
20519608 |
T |
|
| Q |
203 |
caagtctctttg |
214 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
20519609 |
caagtcgctttg |
20519620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 484
Target Start/End: Original strand, 20519868 - 20519928
Alignment:
| Q |
424 |
ccagccatttgagagagagtgtgcgcaaggtagcaatcctatgcaagaagcatgcaattga |
484 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||||||||||| | |||||||| |||||||| |
|
|
| T |
20519868 |
ccagccatttcagagagaatgtatacaaggtagcaatcctaggaaagaagcaagcaattga |
20519928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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