View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0711_low_25 (Length: 251)
Name: NF0711_low_25
Description: NF0711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0711_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 2019754 - 2019991
Alignment:
| Q |
1 |
tattagcagaaattgagtgaagccttattttgttacttaaacttggtaacatgttagcatagggaatttgttaatgaactaaattttgaaacattatatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2019754 |
tattagcagaaattgagtgaagccttattttgttacttaaacttggtaacatgttagcatagggaatttgttaatgaactaaattttgaaa----atatt |
2019849 |
T |
|
| Q |
101 |
ggaaatggtatatttaatttcttgagagtttacaaattgtcttttttatcacaaacttttagtttttattctttaacaagtgcccctaagtgcgcatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2019850 |
ggaaatggtatatttaatttcttgagagtttacaaattgtcttttttatcacaaacttttagtttttattctttaacaagtgcccctaagtgcgcatgtt |
2019949 |
T |
|
| Q |
201 |
agcaaaatccaaactttaataattgctctaaatgccctatga |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
2019950 |
agcaaaatccaaactttaataattgctctaaatgccctatga |
2019991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 2036519 - 2036712
Alignment:
| Q |
44 |
tggtaacatgttagcatagggaatttgttaatgaactaaattttgaaacattatattggaaatggtatatttaatttcttgagagtttacaaattgtctt |
143 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
2036519 |
tggtaatatgttagcatagggaatttgttaatgaactaaattttgaaacattatatgtgaaattgtatatttaatttcttgaaagtttacaaattgtctt |
2036618 |
T |
|
| Q |
144 |
ttttatcacaaacttttagtttttattctttaacaagtgcccctaagtgcgcatgttagcaaaatccaaactttaataattgctctaaatgcccta |
239 |
Q |
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| T |
2036619 |
ttttaacacaaacttttaatttgtattctttaacaagtg-ccctaagagagcatgttagcaaaatcc-aactttaatcattgctctaagtgcccta |
2036712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 1994504 - 1994599
Alignment:
| Q |
60 |
tagggaatttgttaatgaactaaattttgaaacattatattggaaatggtatatttaatttcttgagagtttacaaattgtcttttttatcacaaa |
155 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| | ||| ||||| ||||||| |||||||| |
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| T |
1994504 |
tagggaatgtgttaatgaactaaatattgaaacattatattggaaatggtgtatttcatttcttgaaattttttaaattatctttttcatcacaaa |
1994599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 1990765 - 1990805
Alignment:
| Q |
4 |
tagcagaaattgagtgaagccttattttgttacttaaactt |
44 |
Q |
| |
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|
| T |
1990765 |
tagcagaaactgagtgtagccttattttgttacttaaactt |
1990805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 35315675 - 35315715
Alignment:
| Q |
165 |
tttattctttaacaagtgcccctaagtgcgcatgttagcaa |
205 |
Q |
| |
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||||||| |||||||||||||||||| || ||||||||||| |
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|
| T |
35315675 |
tttattccttaacaagtgcccctaagggcacatgttagcaa |
35315715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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