View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0711_low_26 (Length: 251)

Name: NF0711_low_26
Description: NF0711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0711_low_26
NF0711_low_26
[»] chr8 (11 HSPs)
chr8 (8-112)||(8791725-8791828)
chr8 (184-251)||(8791602-8791669)
chr8 (8-105)||(10069997-10070093)
chr8 (39-102)||(31212338-31212401)
chr8 (39-102)||(33892061-33892124)
chr8 (51-105)||(14148418-14148472)
chr8 (39-104)||(9861591-9861656)
chr8 (43-105)||(6906445-6906507)
chr8 (39-105)||(31212452-31212518)
chr8 (43-105)||(39484728-39484789)
chr8 (46-102)||(14148860-14148916)
[»] chr1 (7 HSPs)
chr1 (39-105)||(22679494-22679560)
chr1 (8-93)||(16706473-16706557)
chr1 (44-105)||(13765578-13765639)
chr1 (45-102)||(14760047-14760104)
chr1 (39-104)||(30749108-30749173)
chr1 (39-104)||(30770559-30770624)
chr1 (39-103)||(32800292-32800356)
[»] chr7 (11 HSPs)
chr7 (39-105)||(23797212-23797278)
chr7 (39-105)||(37081262-37081328)
chr7 (39-102)||(31172343-31172406)
chr7 (43-105)||(3555387-3555448)
chr7 (39-105)||(6036570-6036636)
chr7 (39-105)||(29635257-29635322)
chr7 (41-104)||(20165011-20165074)
chr7 (43-105)||(7760769-7760831)
chr7 (39-105)||(31198320-31198386)
chr7 (39-104)||(9686453-9686518)
chr7 (43-104)||(29635675-29635736)
[»] chr5 (6 HSPs)
chr5 (39-103)||(22297786-22297850)
chr5 (8-104)||(25906096-25906190)
chr5 (39-105)||(22297930-22297996)
chr5 (44-105)||(20510359-20510420)
chr5 (50-102)||(5161081-5161132)
chr5 (39-99)||(25905986-25906046)
[»] chr4 (6 HSPs)
chr4 (43-103)||(17431132-17431192)
chr4 (39-102)||(28687629-28687692)
chr4 (39-105)||(54164634-54164700)
chr4 (41-102)||(34665148-34665209)
chr4 (48-102)||(33752710-33752764)
chr4 (39-104)||(13552830-13552895)
[»] chr2 (9 HSPs)
chr2 (39-102)||(20972390-20972453)
chr2 (39-103)||(4921331-4921395)
chr2 (39-105)||(35926746-35926812)
chr2 (8-104)||(37897598-37897693)
chr2 (8-103)||(981055-981148)
chr2 (39-101)||(12874848-12874910)
chr2 (43-105)||(18509519-18509581)
chr2 (45-102)||(980944-981000)
chr2 (47-102)||(16192588-16192644)
[»] chr6 (7 HSPs)
chr6 (39-105)||(34637592-34637658)
chr6 (45-106)||(7359593-7359654)
chr6 (39-102)||(13340611-13340674)
chr6 (47-105)||(6190591-6190648)
chr6 (40-100)||(14365097-14365157)
chr6 (39-103)||(24704331-24704395)
chr6 (39-103)||(30519704-30519768)
[»] chr3 (8 HSPs)
chr3 (39-102)||(41993144-41993207)
chr3 (43-102)||(44094314-44094373)
chr3 (48-105)||(30172093-30172150)
chr3 (39-104)||(34502625-34502690)
chr3 (39-95)||(10821862-10821918)
chr3 (39-104)||(4475271-4475336)
chr3 (39-103)||(30430294-30430358)
chr3 (39-103)||(32618954-32619018)
[»] scaffold0328 (1 HSPs)
scaffold0328 (42-102)||(11623-11683)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 8791828 - 8791725
Alignment:
Q  8 gagcagagactaatttcatagatgnnnnnnntttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttagggca 107  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8791828 gagcagagactaatttcatagatgaaaaat-tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttagggca 8791730  T
Q  108 agaag 112  Q
    |||||    
T  8791729 agaag 8791725  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 8791669 - 8791602
Alignment:
Q  184 ttgtggtcccaacttgtgatagatccccccttttattccttatggtggtgtggaaagaagaatttttt 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8791669 ttgtggtcccaacttgtgatagatccccccttttattccttatggtggtgtggaaagaagaatttttt 8791602  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 10069997 - 10070093
Alignment:
Q  8 gagcagagactaatttcatagatgnnnnnnntttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||| |||||||||||||||||       |||||||||||||||||||||| ||||||||| ||  || |||||| |||| ||| |||||||||||    
T  10069997 gagcagggactaatttcatagatgaaaaat-tttagagggaccaaaaacctaaaaaatattttaggaggattaaaataaaatattggtatatttaggg 10070093  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 31212401 - 31212338
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 102  Q
    |||||||||||||||| |||||  ||||||||  || || ||||||||||||||||||||||||    
T  31212401 tttagagggaccaaaagcctaaagaatattttatggggactaaaatcaaatgttgatatattta 31212338  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 33892124 - 33892061
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 102  Q
    |||||| |||||||||||||||  ||||||||| || || ||||||||||||||| ||||||||    
T  33892124 tttagaaggaccaaaaacctaaagaatattttgaggggactaaaatcaaatgttggtatattta 33892061  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 14148472 - 14148418
Alignment:
Q  51 aaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||||||| ||||||||| ||  || |||||||||||||||||||||||||||    
T  14148472 aaaaacctaagaaatattttaggaggactaaaatcaaatgttgatatatttaggg 14148418  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 9861656 - 9861591
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttagg 104  Q
    |||||||||||||||| |||||  ||||||||   | || ||||||||||||||||||||||||||    
T  9861656 tttagagggaccaaaagcctaaagaatattttatagggactaaaatcaaatgttgatatatttagg 9861591  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 6906445 - 6906507
Alignment:
Q  43 gagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||| ||||| ||||| |||||||||  || || ||||||||||||||| |||||||||||    
T  6906445 gagggatcaaaagcctaaaaaatattttatggggactaaaatcaaatgttggtatatttaggg 6906507  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 31212452 - 31212518
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||||| | |||||||||||  ||||||||  || || ||||||||||||||| |||||||||||    
T  31212452 tttagaggaaacaaaaacctaaagaatattttatggggactaaaatcaaatgttggtatatttaggg 31212518  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 39484728 - 39484789
Alignment:
Q  43 gagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||||||||| ||||| ||||||||| ||| || |||||  ||||||||||||||||||||    
T  39484728 gagggaccaaaatcctaagaaatattttagggagattaaaa-aaaatgttgatatatttaggg 39484789  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 14148860 - 14148916
Alignment:
Q  46 ggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 102  Q
    ||||||||| ||||| |||||| || ||| || ||||||||||||||| ||||||||    
T  14148860 ggaccaaaagcctaaaaaatatgttagggggactaaaatcaaatgttggtatattta 14148916  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 22679494 - 22679560
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||||||||||||||||||||||||||||| | | || ||||||||||||||| |||||||||||    
T  22679494 tttagagggaccaaaaacctaacaaatattttagagggactaaaatcaaatgttggtatatttaggg 22679560  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 16706473 - 16706557
Alignment:
Q  8 gagcagagactaatttcatagatgnnnnnnntttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttg 93  Q
    |||||||||||||||| |||||||       ||||||||||||||||||||||  |||||||| ||| || |||||||||||||||    
T  16706473 gagcagagactaatttgatagatggaaaat-tttagagggaccaaaaacctaaagaatattttagggggactaaaatcaaatgttg 16706557  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 13765639 - 13765578
Alignment:
Q  44 agggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||||||||||||||  ||||||||  || || ||||||||||||||| |||||||||||    
T  13765639 agggaccaaaaacctaaagaatattttatggggactaaaatcaaatgttggtatatttaggg 13765578  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 14760047 - 14760104
Alignment:
Q  45 gggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 102  Q
    |||||||||| ||||| ||||||||| ||| || ||||||||||||||| ||||||||    
T  14760047 gggaccaaaagcctaaaaaatattttagggggattaaaatcaaatgttggtatattta 14760104  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 30749108 - 30749173
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttagg 104  Q
    |||||||| ||||||||| ||| ||||||||| | |  | ||||||||||||||||||||||||||    
T  30749108 tttagaggaaccaaaaacataaaaaatattttagaggaattaaaatcaaatgttgatatatttagg 30749173  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 30770559 - 30770624
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttagg 104  Q
    |||||||| ||||||||| ||| ||||||||| | |  | ||||||||||||||||||||||||||    
T  30770559 tttagaggaaccaaaaacataaaaaatattttagaggaattaaaatcaaatgttgatatatttagg 30770624  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 32800292 - 32800356
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttag 103  Q
    |||||||||||||||||||||   ||||||||  |  || ||||||||||| |||||||||||||    
T  32800292 tttagagggaccaaaaacctacataatattttatgaggattaaaatcaaatattgatatatttag 32800356  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 23797212 - 23797278
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    ||||||||||||||||| |||| ||||||||| | | || |||||||||||||||||||||||||||    
T  23797212 tttagagggaccaaaaatctaagaaatattttagagggactaaaatcaaatgttgatatatttaggg 23797278  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 37081262 - 37081328
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    ||||||||||||||||||||||  |||||||| ||| || |||||||||| ||||||||||||||||    
T  37081262 tttagagggaccaaaaacctaaggaatatttttgggggactaaaatcaaacgttgatatatttaggg 37081328  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 31172343 - 31172406
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 102  Q
    |||||||||||||||||||||| ||||||||| ||  || ||||||||||||||  ||||||||    
T  31172343 tttagagggaccaaaaacctaaaaaatattttaggaggattaaaatcaaatgtttgtatattta 31172406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 3555448 - 3555387
Alignment:
Q  43 gagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||||||||| ||||| ||||||||| ||| || ||||||||||||||| |||||||||||    
T  3555448 gagggaccaaaa-cctaagaaatattttagggggactaaaatcaaatgttggtatatttaggg 3555387  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 6036636 - 6036570
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    ||||||| | |||||||||||| || ||||||  || || |||||||||||||||||||||||||||    
T  6036636 tttagagaggccaaaaacctaaaaactattttaaggggactaaaatcaaatgttgatatatttaggg 6036570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 29635322 - 29635257
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    ||||||||||||||||  ||||  |||||||| ||| || |||||||||||||||||||||||||||    
T  29635322 tttagagggaccaaaagtctaaggaatattttaggg-gactaaaatcaaatgttgatatatttaggg 29635257  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 20165011 - 20165074
Alignment:
Q  41 tagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttagg 104  Q
    |||||||| |||||||||||  |||||||| | | || ||||||||||||||| ||||||||||    
T  20165011 tagagggatcaaaaacctaatgaatattttagagggactaaaatcaaatgttggtatatttagg 20165074  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 7760769 - 7760831
Alignment:
Q  43 gagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||||||||| ||||| |||||||||   | || ||||||||||||||| |||||||||||    
T  7760769 gagggaccaaaagcctaagaaatattttatagggactaaaatcaaatgttggtatatttaggg 7760831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 31198386 - 31198320
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||||||| ||| ||||||| ||||||||| |   || ||||||||||||||| |||||||||||    
T  31198386 tttagagggatcaataacctaaaaaatattttagaaggactaaaatcaaatgttggtatatttaggg 31198320  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 9686453 - 9686518
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttagg 104  Q
    |||||| ||||||||| |||||  ||||||||  || || ||||||||||| ||||||||||||||    
T  9686453 tttagaaggaccaaaagcctaaataatattttatggggactaaaatcaaatattgatatatttagg 9686518  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 29635675 - 29635736
Alignment:
Q  43 gagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttagg 104  Q
    |||||||||||| | ||| ||||||||| ||   | ||||||||||||||||||||||||||    
T  29635675 gagggaccaaaatcttaaaaaatattttaggagaactaaaatcaaatgttgatatatttagg 29635736  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 22297850 - 22297786
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttag 103  Q
    |||| ||||||||||||||||| ||||||||| | | || |||||||||||||||||||||||||    
T  22297850 tttaaagggaccaaaaacctaaaaaatattttagagggactaaaatcaaatgttgatatatttag 22297786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 25906096 - 25906190
Alignment:
Q  8 gagcagagactaatttcatagatgnnnnnnntttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttagg 104  Q
    |||||||||||||||||||| |||       |||||||||||||||| |||||  |||||||  ||| || ||||||||||||||||||||||||||    
T  25906096 gagcagagactaatttcataaatgaaaaa--tttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttagg 25906190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 22297930 - 22297996
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||||||||||||||| ||| |||||||||  || || ||||||||||||||  |||||||||||    
T  22297930 tttagagggaccaaaaacttaaaaaatattttaaggggactaaaatcaaatgttagtatatttaggg 22297996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 20510420 - 20510359
Alignment:
Q  44 agggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||| ||||||||||  ||||||||  || || |||||||||||||| ||||||||||||    
T  20510420 agggactaaaaacctaaagaatatttttaggggactaaaatcaaatgttaatatatttaggg 20510359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 5161081 - 5161132
Alignment:
Q  50 caaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 102  Q
    |||||||||||  |||||||| ||| ||||||||||||||||| |||||||||    
T  5161081 caaaaacctaaataatattttaggg-gagtaaaatcaaatgttaatatattta 5161132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 25906046 - 25905986
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatat 99  Q
    |||||||||||||||| ||||  ||||| ||| ||| || ||||||||||||||| |||||    
T  25906046 tttagagggaccaaaagcctatgaaatactttagggggactaaaatcaaatgttggtatat 25905986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 17431132 - 17431192
Alignment:
Q  43 gagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttag 103  Q
    |||||||||||| ||||| ||||||||| ||| || |||||||||||||||||||||||||    
T  17431132 gagggaccaaaagcctaaaaaatattttagggggactaaaatcaaatgttgatatatttag 17431192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 28687629 - 28687692
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 102  Q
    |||||||||||||||| ||||| ||||||||| | || | ||||||||||||||||||||||||    
T  28687629 tttagagggaccaaaaccctaaaaaatattttagagtaactaaaatcaaatgttgatatattta 28687692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 54164634 - 54164700
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||||||||| ||||||||| |||||||||   | || ||||||||||||||| |||||||||||    
T  54164634 tttagagggaccgaaaacctaaaaaatattttatagagactaaaatcaaatgttggtatatttaggg 54164700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 34665148 - 34665209
Alignment:
Q  41 tagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 102  Q
    |||| ||| ||||| ||||| ||||||||| |||||| ||||||||||||||| ||||||||    
T  34665148 tagaaggaacaaaagcctaaaaaatattttagggtgactaaaatcaaatgttggtatattta 34665209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 33752710 - 33752764
Alignment:
Q  48 accaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 102  Q
    ||||||| |||||  |||||||| ||| || ||||||||||||||||||||||||    
T  33752710 accaaaagcctaaagaatattttagggagactaaaatcaaatgttgatatattta 33752764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 13552830 - 13552895
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttagg 104  Q
    |||||| ||||||||| |||||  ||||||||  || || ||||||||||| ||||||||||||||    
T  13552830 tttagaaggaccaaaagcctaaataatattttatggggactaaaatcaaatattgatatatttagg 13552895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 20972390 - 20972453
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 102  Q
    ||||| |||||||||||||||| |||||||||  || || ||||||||||||||||||||||||    
T  20972390 tttagcgggaccaaaaacctaagaaatattttttggggactaaaatcaaatgttgatatattta 20972453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 4921331 - 4921395
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttag 103  Q
    ||||||||||| ||||| |||| |||||||||  || || |||||||||||||||||||||||||    
T  4921331 tttagagggacaaaaaatctaaaaaatattttaaggggattaaaatcaaatgttgatatatttag 4921395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 35926812 - 35926746
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||||| || |||||||||| |||||||||  || || ||||||||||||||| |||||||||||    
T  35926812 tttagaggaactaaaaacctaaaaaatattttatggagactaaaatcaaatgttggtatatttaggg 35926746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 37897693 - 37897598
Alignment:
Q  8 gagcagagactaatttcatagatgnnnnnnntttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttagg 104  Q
    ||||||||||||||||||| ||||       |||||||||||| |||||||||  |||||||| | | |||||||||||||||||| | ||||||||    
T  37897693 gagcagagactaatttcatggatgaaaatt-tttagagggaccgaaaacctaaggaatattttagagggagtaaaatcaaatgttggtctatttagg 37897598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 981055 - 981148
Alignment:
Q  8 gagcagagactaatttcatagatgnnnnnnntttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttag 103  Q
    |||||||||||||||||||| |||       |||||||||||||||| |||||  |||||||| ||| || ||||||||||||||| |||||||||    
T  981055 gagcagagactaatttcataaatgaaaaat-tttagagggaccaaaagcctaaagaatattttaggg-gactaaaatcaaatgttggtatatttag 981148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 12874848 - 12874910
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattt 101  Q
    ||||||||||||||||||||||  |||||||| | | || ||||||||||| ||| |||||||    
T  12874848 tttagagggaccaaaaacctaaataatattttagagggactaaaatcaaatattggtatattt 12874910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 18509581 - 18509519
Alignment:
Q  43 gagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    ||||||||||||||| ||  |||||||| | | || ||||||||||||||| |||||||||||    
T  18509581 gagggaccaaaaaccaaaggaatattttagagggactaaaatcaaatgttggtatatttaggg 18509519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 981000 - 980944
Alignment:
Q  45 gggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 102  Q
    |||||||||| ||||| ||||||||| | | || ||||||||||||||||||||||||    
T  981000 gggaccaaaagcctaagaaatattttagag-gactaaaatcaaatgttgatatattta 980944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 16192588 - 16192644
Alignment:
Q  47 gaccaaaaa-cctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 102  Q
    ||||||||| |||||  |||||||| ||| || ||||||||||||||||||||||||    
T  16192588 gaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttgatatattta 16192644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 34637592 - 34637658
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||||||||||||||||| |  |||||||| |||  | |||||||||||||||||||||||||||    
T  34637592 tttagagggaccaaaaacctcaagaatattttaggggaactaaaatcaaatgttgatatatttaggg 34637658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 7359593 - 7359654
Alignment:
Q  45 gggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttagggc 106  Q
    |||| ||||| |||||  |||||||| ||| |||||||||||||||||| ||||||||||||    
T  7359593 gggatcaaaagcctaaataatattttagggggagtaaaatcaaatgttggtatatttagggc 7359654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 13340611 - 13340674
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 102  Q
    ||||||||||||||||||||||  ||||||||  || || ||||||||||||||  ||||||||    
T  13340611 tttagagggaccaaaaacctaaagaatattttatggggactaaaatcaaatgttagtatattta 13340674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 6190648 - 6190591
Alignment:
Q  47 gaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||||||||||| ||||||||  ||  || |||||||||||||||||||||||||||    
T  6190648 gaccaaaaacctaagaaatatttaagga-gactaaaatcaaatgttgatatatttaggg 6190591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 14365097 - 14365157
Alignment:
Q  40 ttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatt 100  Q
    |||||||||||||||  |||| ||||||||| |   || ||||||||||||||||||||||    
T  14365097 ttagagggaccaaaattctaagaaatattttagatggactaaaatcaaatgttgatatatt 14365157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 24704395 - 24704331
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttag 103  Q
    |||||||||||||||| | |||  |||||||| ||| || ||||||||||| ||| |||||||||    
T  24704395 tttagagggaccaaaagcataaataatattttagggagactaaaatcaaatattggtatatttag 24704331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 30519768 - 30519704
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttag 103  Q
    |||||||||||||||||| |||  ||||||||   | || ||||||||||||||| |||||||||    
T  30519768 tttagagggaccaaaaacttaaataatattttaaagagattaaaatcaaatgttggtatatttag 30519704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 41993144 - 41993207
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 102  Q
    |||||||||| ||||| ||||| ||||||||| ||| || ||||||||||| ||||||||||||    
T  41993144 tttagagggatcaaaagcctaaaaaatattttagggagattaaaatcaaatattgatatattta 41993207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 44094314 - 44094373
Alignment:
Q  43 gagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 102  Q
    |||||||||||| ||||| |||||||||  || || ||||||||||||||||||||||||    
T  44094314 gagggaccaaaaccctaagaaatattttcaggagactaaaatcaaatgttgatatattta 44094373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 30172150 - 30172093
Alignment:
Q  48 accaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttaggg 105  Q
    |||||||||||||  ||||||||  || || |||||||||||||||||||||||||||    
T  30172150 accaaaaacctaaagaatattttaaggggactaaaatcaaatgttgatatatttaggg 30172093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 34502690 - 34502625
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttagg 104  Q
    ||||||||||| |||| ||||| |||||||||   | || ||||||||||||||||||||||||||    
T  34502690 tttagagggacgaaaagcctaaaaaatattttatagggactaaaatcaaatgttgatatatttagg 34502625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 10821918 - 10821862
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgat 95  Q
    |||||||||||||||| ||||| |||||||||  ||||| |||||| ||||||||||    
T  10821918 tttagagggaccaaaagcctaaaaaatattttacggtgactaaaataaaatgttgat 10821862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 4475271 - 4475336
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttagg 104  Q
    |||||| ||| |||||||||||  || |||||   |||| ||||||||||||||||||||||||||    
T  4475271 tttagaaggatcaaaaacctaaagaaaattttaaagtgattaaaatcaaatgttgatatatttagg 4475336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 30430358 - 30430294
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttag 103  Q
    |||||||||||||||| |||||  |||||||| | |  | ||||||||||||||| |||||||||    
T  30430358 tttagagggaccaaaagcctaaagaatattttagaggaactaaaatcaaatgttggtatatttag 30430294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 32618954 - 32619018
Alignment:
Q  39 tttagagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatatttag 103  Q
    |||||||| || ||||| |||| ||||||||| |   || |||||||||||||||||||||||||    
T  32618954 tttagaggaactaaaaatctaaaaaatattttagaaagactaaaatcaaatgttgatatatttag 32619018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 11623 - 11683
Alignment:
Q  42 agagggaccaaaaacctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 102  Q
    ||||||||||||||||||| ||||||||| | |||| ||||||||||| ||  ||||||||    
T  11623 agagggaccaaaaacctaagaaatattttagagtgactaaaatcaaatattcgtatattta 11683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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