View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0711_low_4 (Length: 507)
Name: NF0711_low_4
Description: NF0711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0711_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 30 - 499
Target Start/End: Complemental strand, 8203686 - 8203217
Alignment:
| Q |
30 |
tctacaagatttagaaacttaacatgtctttgttggttctctactgtgtacccatattgatgtgtcttgcttacatttctgtgtaatctatttgttattt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8203686 |
tctacaagatttagaaacttaacatgtctttgttggttctctactgtatacccatattgatgtgtcttgcttacatttctgtgtaatctatttgttattt |
8203587 |
T |
|
| Q |
130 |
attttcaaacaattggttaaggttattggttttgagagagtatgatgttttccattttggtttgaatcgctcaccggcttacatccccccatgcattacc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8203586 |
attttcaaacaattggttaaggttattggttttgagagagtatgatgttttccattttggtttgaatcgctcaccggcttacatccccccatgcattacc |
8203487 |
T |
|
| Q |
230 |
aagttggatttagttttggctttgagagagttcgttgtcttctgtcttgaaggcctttagaggtggtaataggggaattatacatctaccattcatggat |
329 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8203486 |
aagttggatttggttttggctttgagagagttcgttgtcttctgtcttgaaggcctttagaggtggtaataggggaattatacatctaccattcatggat |
8203387 |
T |
|
| Q |
330 |
gtgtttgttacgtaaatagttattttgtcgtttacatgctgtttacttaacatatttatttcttgaataggaaaaactgaaagagaaaaaacctaccatg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8203386 |
gtgtttgttacgtaaatagttattttgttgtttacatgatgtctacttaacatatttatttcttgaataggaaaaactgaaagagaaaaaacctaccatg |
8203287 |
T |
|
| Q |
430 |
accgaggcattgtctcagacacttcaagcgattcataaagctggatgcattagccttgttgatattgttg |
499 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8203286 |
accgaggcattgtctcagactcttcaagcgattcataaagctggatgcattagccttgttgatattgttg |
8203217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 39 - 359
Target Start/End: Complemental strand, 42360837 - 42360507
Alignment:
| Q |
39 |
tttagaaacttaacatgtctttgttggttctctactgtgtacccatatt---gatgtgtcttgcttacatttctgtgtaatctatttgttatttattttc |
135 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||| |||||||||||||||||| ||| || ||||||||| |
|
|
| T |
42360837 |
tttagaaactt--catgtctttgttggttctctattttgtacccatatttttgatgtgtctcaattacatttctgtgtaatcaattcattttttattttc |
42360740 |
T |
|
| Q |
136 |
aaacaattggttaa--ggttat-------tggttttgagagagtatgatgttttccattttggtttgaatcgctcaccggcttacatccccc-catgcat |
225 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| |||||| ||||| |||||| ||||||| ||||||||| |||||||||| ||||||| |
|
|
| T |
42360739 |
caacaattggttaactggttaacgtgtgatggttttgagag--tatgattttttc-attttgatttgaattgctcaccggtatacatcccccacatgcat |
42360643 |
T |
|
| Q |
226 |
taccaagttggatttagtttt-ggctttgagagagttcgttgtcttctgtcttgaaggcctttagaggtggtaataggggaattatacatctaccattca |
324 |
Q |
| |
|
||||| |||| || | ||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||||| ||||||||||| | |||| | |||| |
|
|
| T |
42360642 |
taccatgttgaatcttgtttttggctttgagaaagttggttgtcttctgtcttgaacgcctttagaggtggtaacaggggaattatgcttctatcgttca |
42360543 |
T |
|
| Q |
325 |
tggatgtgtttgtt-acgtaaatagttattttgtcg |
359 |
Q |
| |
|
|||| || |||||| | ||||||||||||||||||| |
|
|
| T |
42360542 |
tggaagtttttgttaaagtaaatagttattttgtcg |
42360507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 388 - 499
Target Start/End: Complemental strand, 42360456 - 42360345
Alignment:
| Q |
388 |
tttcttgaataggaaaaactgaaagagaaaaaacctaccatgaccgaggcattgtctcagacacttcaagcgattcataaagctggatgcattagccttg |
487 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42360456 |
tttctttaataggaaaaattgaaagagaaaaaacctaccatgaccgaggcattgtctcagactcttcaagcgattcataaagctggatgcattagtcttg |
42360357 |
T |
|
| Q |
488 |
ttgatattgttg |
499 |
Q |
| |
|
||||| |||||| |
|
|
| T |
42360356 |
ttgatgttgttg |
42360345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 857 times since January 2019
Visitors: 4356