View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0711_low_5 (Length: 440)
Name: NF0711_low_5
Description: NF0711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0711_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 298 - 394
Target Start/End: Complemental strand, 44781264 - 44781168
Alignment:
| Q |
298 |
atatactcgatttgaaaaatttatccaaattccccaaaactctattttaatacaattttttaatcttgcaaataaaggagatcatttacaagaatta |
394 |
Q |
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| T |
44781264 |
atatactcgatttgaaaaatttacccaaattccccaaaactctcttttaatacaattttttaatcttgcaaattaaggagatcatttacaagaatta |
44781168 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 44318417 - 44318377
Alignment:
| Q |
292 |
aacaatatatactcgatttgaaaaatttatccaaattcccc |
332 |
Q |
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| T |
44318417 |
aacaatatatattggatttgaaaaatttatccaaatccccc |
44318377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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