View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0711_low_9 (Length: 409)

Name: NF0711_low_9
Description: NF0711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0711_low_9
NF0711_low_9
[»] chr4 (12 HSPs)
chr4 (3-396)||(29865881-29866295)
chr4 (124-245)||(49583228-49583348)
chr4 (127-244)||(5199073-5199187)
chr4 (267-329)||(13198058-13198120)
chr4 (273-331)||(21315542-21315600)
chr4 (129-221)||(4848495-4848585)
chr4 (190-244)||(4151332-4151386)
chr4 (267-317)||(25968129-25968179)
chr4 (267-321)||(28147112-28147166)
chr4 (273-331)||(46824613-46824671)
chr4 (267-330)||(11440697-11440760)
chr4 (267-329)||(55606224-55606286)
[»] chr5 (7 HSPs)
chr5 (123-244)||(6329066-6329187)
chr5 (273-331)||(37247650-37247708)
chr5 (267-321)||(13424625-13424679)
chr5 (126-184)||(21256883-21256941)
chr5 (275-312)||(41283628-41283665)
chr5 (275-323)||(27983517-27983565)
chr5 (123-222)||(31897939-31898038)
[»] chr7 (11 HSPs)
chr7 (126-216)||(24118233-24118323)
chr7 (123-236)||(22350543-22350656)
chr7 (273-331)||(6218263-6218321)
chr7 (267-317)||(33049256-33049306)
chr7 (267-313)||(31743019-31743065)
chr7 (123-196)||(21510349-21510422)
chr7 (267-331)||(39653432-39653496)
chr7 (267-302)||(10493374-10493409)
chr7 (123-221)||(39048760-39048858)
chr7 (267-329)||(47363681-47363743)
chr7 (267-323)||(25635887-25635943)
[»] chr1 (15 HSPs)
chr1 (123-244)||(32900274-32900395)
chr1 (149-216)||(32894433-32894500)
chr1 (267-329)||(9457744-9457806)
chr1 (267-329)||(9461841-9461903)
chr1 (273-327)||(24909049-24909103)
chr1 (273-327)||(24909141-24909195)
chr1 (273-331)||(26828603-26828661)
chr1 (163-239)||(16424898-16424973)
chr1 (276-327)||(9032444-9032495)
chr1 (275-329)||(3722410-3722464)
chr1 (188-234)||(16441166-16441212)
chr1 (267-317)||(32617560-32617610)
chr1 (130-211)||(26828436-26828516)
chr1 (282-318)||(963102-963138)
chr1 (267-307)||(12990644-12990684)
[»] chr2 (7 HSPs)
chr2 (267-329)||(37794629-37794691)
chr2 (267-331)||(5430278-5430342)
chr2 (267-329)||(17988965-17989027)
chr2 (189-244)||(22588147-22588202)
chr2 (267-329)||(35016301-35016363)
chr2 (269-311)||(42237556-42237598)
chr2 (267-300)||(19263862-19263895)
[»] chr8 (9 HSPs)
chr8 (129-221)||(6196517-6196609)
chr8 (273-331)||(20762748-20762806)
chr8 (269-331)||(6196698-6196760)
chr8 (269-307)||(14370815-14370853)
chr8 (267-307)||(7154256-7154296)
chr8 (267-323)||(13402212-13402268)
chr8 (270-323)||(45191599-45191652)
chr8 (163-219)||(7411419-7411475)
chr8 (267-307)||(13396914-13396954)
[»] chr6 (9 HSPs)
chr6 (273-331)||(9771926-9771984)
chr6 (267-302)||(26660621-26660656)
chr6 (267-302)||(26766592-26766627)
chr6 (273-330)||(2718805-2718863)
chr6 (148-221)||(2918265-2918337)
chr6 (148-221)||(2919254-2919326)
chr6 (269-298)||(6134221-6134250)
chr6 (194-223)||(27999346-27999375)
chr6 (270-302)||(9177725-9177757)
[»] chr3 (3 HSPs)
chr3 (123-177)||(44652818-44652872)
chr3 (275-304)||(53527203-53527232)
chr3 (267-327)||(11783386-11783446)
[»] scaffold0006 (1 HSPs)
scaffold0006 (273-330)||(75594-75651)
[»] scaffold0472 (1 HSPs)
scaffold0472 (269-304)||(11806-11841)
[»] scaffold0526 (1 HSPs)
scaffold0526 (273-301)||(3377-3405)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 3 - 396
Target Start/End: Original strand, 29865881 - 29866295
Alignment:
Q  3 tctaaaaaccggttcgttataggtagtgtctgataccgttttaacatagtgaacaaaaactacggatgcagctgcagtaaacggcagagaacaaatttat 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||    
T  29865881 tctaaaaaccggttcgttataggtagtgtctgataccgttttaacatagtgaacaaaaactacggacgctgctgcagtaaatggcagagaacaaatttat 29865980  T
Q  103 tgttaaacttgnnnnnnnnn-------atgctcttgtctcttcttaaaacattaaaacctgaattagttagtggttaatttggtttttaaacgaaacaaa 195  Q
    |||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29865981 tgttaaacttgttttttttttttttttatgctcttgtctcttcttaaaacattaaaacctgaattagttagtggttaatttggtttttaaacgaaacaaa 29866080  T
Q  196 ttcattgcaaaattatgaaaagaattacaggtatgaaattatgaagaaattaagtcgatagtaaaaatagttttaagatttgtgcaatgttgtgattaat 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29866081 ttcattgcaaaattatgaaaagaattacaggtatgaaattatgaagaaattaagttgatagtaaaaatagttttaagatttgtgcaatgttgtgattaat 29866180  T
Q  296 tcacaccacgacgaccacaatctgtaacgcaacat--------------cagccaaaatcgtgaaatccttaacgtgaccgcgattcaaaacctttttat 381  Q
    |||||||||||| ||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29866181 tcacaccacgacaaccacaatctgtaacgcaacatcagtaacaggctaccagccaaaatcgtgaaatccttaacgtgaccgcgattcaaaacctttttat 29866280  T
Q  382 ctatatccatactct 396  Q
    |||||||||||||||    
T  29866281 ctatatccatactct 29866295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 49583348 - 49583228
Alignment:
Q  124 tgctcttgtctcttcttaaaacattaaaacctgaattagttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattatgaaaagaattac 223  Q
    ||||||||||||||||||||||||| |||| ||||||  ||||||| ||||||| ||| || | |||| ||||||||| | |||||||||||| ||||||    
T  49583348 tgctcttgtctcttcttaaaacattgaaacatgaatttattagtggctaatttgatttgtagaagaaataaattcattactaaattatgaaaataattac 49583249  T
Q  224 aggtatgaaattatgaagaaat 245  Q
    |  |||||||||| ||||||||    
T  49583248 a-ctatgaaattaagaagaaat 49583228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 127 - 244
Target Start/End: Complemental strand, 5199187 - 5199073
Alignment:
Q  127 tcttgtctcttcttaaaacattaaaacctgaattagttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattatgaaaagaattacagg 226  Q
    ||||||||||||| ||||||||| ||||| | ||| |||| ||||||||| |||| || | |||| ||||||||| |||||||||||||||||||| ||     
T  5199187 tcttgtctcttct-aaaacattacaacctaattta-ttagaggttaattttgtttatataagaaa-aaattcattacaaaattatgaaaagaattatagt 5199091  T
Q  227 tatgaaattatgaagaaa 244  Q
     |||||||||||||||||    
T  5199090 aatgaaattatgaagaaa 5199073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 13198120 - 13198058
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaaca 329  Q
    ||||||| |||||||||||||||||||||||||||| |||| | |||||||  ||||||||||    
T  13198120 tttaagagttgtgcaatgttgtgattaattcacaccgcgacaatcacaatccttaacgcaaca 13198058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 21315600 - 21315542
Alignment:
Q  273 atttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaacatc 331  Q
    ||||||||| |||||||||||||||||||| ||||||||  ||||||||| ||||||||    
T  21315600 atttgtgcattgttgtgattaattcacaccgcgacgaccgtaatctgtaatgcaacatc 21315542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 4848495 - 4848585
Alignment:
Q  129 ttgtctcttcttaaaacattaaaacctgaattagttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattatgaaaagaatt 221  Q
    ||||||||||| ||||| ||||||||| | ||| ||||||||| ||||||||| || | |||| ||| ||||| |||||||||||||||||||    
T  4848495 ttgtctcttct-aaaacgttaaaacctaattta-ttagtggttgatttggtttatataagaaaaaaagtcattacaaaattatgaaaagaatt 4848585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 4151332 - 4151386
Alignment:
Q  190 aacaaattcattgcaaaattatgaaaagaattacaggtatgaaattatgaagaaa 244  Q
    ||||||||||||| ||| ||||||||| ||||| || ||||||||||||||||||    
T  4151332 aacaaattcattgaaaagttatgaaaataattagagttatgaaattatgaagaaa 4151386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 25968129 - 25968179
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatc 317  Q
    ||||||| |||||||||||||||||||||||||||| |||| ||| |||||    
T  25968129 tttaagagttgtgcaatgttgtgattaattcacaccgcgacaaccgcaatc 25968179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 28147112 - 28147166
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgta 321  Q
    ||||||| |||||||||||||||||||||||||||| |||| ||| || ||||||    
T  28147112 tttaagagttgtgcaatgttgtgattaattcacaccgcgacaaccgcactctgta 28147166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 46824671 - 46824613
Alignment:
Q  273 atttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaacatc 331  Q
    ||||||||| |||||||||||||| ||||| |||||| | |||||||||| ||||||||    
T  46824671 atttgtgcattgttgtgattaatttacaccgcgacgatcgcaatctgtaatgcaacatc 46824613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 330
Target Start/End: Original strand, 11440697 - 11440760
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaacat 330  Q
    ||||||| |||  ||||||||||||||||||||||| |||| || ||||||  |||||||||||    
T  11440697 tttaagagttgaacaatgttgtgattaattcacaccgcgacaacaacaatccataacgcaacat 11440760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 55606286 - 55606224
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaaca 329  Q
    ||||||| ||||||||||||||||||||||||||   |||| |||  |||||||| |||||||    
T  55606286 tttaagagttgtgcaatgttgtgattaattcacaatgcgacaaccgtaatctgtatcgcaaca 55606224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 123 - 244
Target Start/End: Original strand, 6329066 - 6329187
Alignment:
Q  123 atgctcttgtctcttcttaaaacattaaaacctgaattagttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattatgaaaagaatta 222  Q
    ||||||||||||||||| |||| |||||||  ||||||  ||||||| |||||||||||||| | |||||||||||| |  |||||||||||||||||||    
T  6329066 atgctcttgtctcttctaaaaagattaaaatttgaatttattagtggctaatttggtttttagatgaaacaaattcactaaaaaattatgaaaagaatta 6329165  T
Q  223 caggtatgaaattatgaagaaa 244  Q
    | | ||||||||||| ||||||    
T  6329166 ccgttatgaaattataaagaaa 6329187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 37247650 - 37247708
Alignment:
Q  273 atttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaacatc 331  Q
    ||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  37247650 atttgtgcattgttgtgattaattcacaccgcgacaaccacaatctgtaacgcaacatc 37247708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 13424679 - 13424625
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgta 321  Q
    ||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  13424679 tttaagagttgtgcaatgttgtgattaattcacaccacgacaactacaatctgta 13424625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 21256941 - 21256883
Alignment:
Q  126 ctcttgtctcttcttaaaacattaaaacctgaattagttagtggttaatttggttttta 184  Q
    |||||||||||||| |||||||| |||| |||| |  ||||||||||||||||||||||    
T  21256941 ctcttgtctcttctaaaaacattgaaacatgaactttttagtggttaatttggttttta 21256883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 41283628 - 41283665
Alignment:
Q  275 ttgtgcaatgttgtgattaattcacaccacgacgacca 312  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  41283628 ttgtgcaatgttgtgattaattcacaccacgacaacca 41283665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 27983565 - 27983517
Alignment:
Q  275 ttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaac 323  Q
    ||||||||||||||||||||||||| |  ||||||||||||| ||||||    
T  27983565 ttgtgcaatgttgtgattaattcaccctgcgacgaccacaatttgtaac 27983517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 31897939 - 31898038
Alignment:
Q  123 atgctcttgtctcttcttaaaacattaaaacctgaattagttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattatgaaaagaatta 222  Q
    |||||||| |||||||| |||||||||||| ||| |||  ||| |||||||| ||  ||||| | ||||||||||| || | ||| |||||||| |||||    
T  31897939 atgctcttatctcttctaaaaacattaaaatctggatttattaatggttaatatgacttttagaagaaacaaattctttacgaaactatgaaaataatta 31898038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 24118233 - 24118323
Alignment:
Q  126 ctcttgtctcttcttaaaacattaaaacctgaattagttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattatgaaaa 216  Q
    |||||||||||||| ||||||||||||||||||||  | ||||||||||||||| |||| | |||||||| ||||| ||||||||||||||    
T  24118233 ctcttgtctcttctaaaaacattaaaacctgaatttatcagtggttaatttggtgtttagaagaaacaaagtcattacaaaattatgaaaa 24118323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 236
Target Start/End: Complemental strand, 22350656 - 22350543
Alignment:
Q  123 atgctcttgtctcttcttaaaacattaaaacctgaattagttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattatgaaaagaatta 222  Q
    |||||| |||||||| | |||||||| |||| ||||||  ||||||||| || || ||||||||  ||||||||||| || |||||||||||||||||||    
T  22350656 atgctcgtgtctcttttaaaaacattgaaacgtgaatttattagtggttgatatgatttttaaataaaacaaattcactgaaaaattatgaaaagaatta 22350557  T
Q  223 caggtatgaaatta 236  Q
    | | ||||||||||    
T  22350556 cggttatgaaatta 22350543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 6218263 - 6218321
Alignment:
Q  273 atttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaacatc 331  Q
    ||||||||| |||||||||||||||||    ||||||||||||||||||||||||||||    
T  6218263 atttgtgcattgttgtgattaattcactttgcgacgaccacaatctgtaacgcaacatc 6218321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 33049256 - 33049306
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatc 317  Q
    ||||||| |||||||||||| ||||||||||||||| ||||||||||||||    
T  33049256 tttaagagttgtgcaatgttttgattaattcacacctcgacgaccacaatc 33049306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 31743019 - 31743065
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccac 313  Q
    |||||||  |||||||||||||||||||||||||| |||||||||||    
T  31743019 tttaagaactgtgcaatgttgtgattaattcacacaacgacgaccac 31743065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 21510422 - 21510349
Alignment:
Q  123 atgctcttgtctcttcttaaaacattaaaacctgaattagttagtggttaatttggtttttaaacgaaacaaat 196  Q
    |||| |||||||||| | |||| | |||||||||| ||  |||||||||||||||||||||| | |||||||||    
T  21510422 atgcacttgtctcttttaaaaatagtaaaacctgagtttattagtggttaatttggtttttagaagaaacaaat 21510349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 39653496 - 39653432
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaacatc 331  Q
    ||||||| ||||| ||| |||||||||||||||||| | || |||||||||  ||||||||||||    
T  39653496 tttaagagttgtggaatattgtgattaattcacaccgcaacaaccacaatccataacgcaacatc 39653432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 302
Target Start/End: Complemental strand, 10493409 - 10493374
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacacc 302  Q
    ||||||| ||||||||||||||||||||||||||||    
T  10493409 tttaagagttgtgcaatgttgtgattaattcacacc 10493374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 39048858 - 39048760
Alignment:
Q  123 atgctcttgtctcttcttaaaacattaaaacctgaattagttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattatgaaaagaatt 221  Q
    ||||||||||||||||| ||| | |||||| |||||||  | ||||||| |||| ||||||| |  ||| |  |||||| |||||| ||||||||||||    
T  39048858 atgctcttgtctcttctaaaacccttaaaatctgaatttatcagtggttgatttagtttttagaataaaaactttcattacaaaatcatgaaaagaatt 39048760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 47363743 - 47363681
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaaca 329  Q
    ||||||| |||||||||||| |||||||||||||||| ||| ||| |||| | || |||||||    
T  47363743 tttaagacttgtgcaatgttttgattaattcacaccaagacaaccgcaatttatatcgcaaca 47363681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 25635943 - 25635887
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaac 323  Q
    |||||||  ||||||||||||||||||||||||||| | || ||| ||||| |||||    
T  25635943 tttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaac 25635887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 123 - 244
Target Start/End: Original strand, 32900274 - 32900395
Alignment:
Q  123 atgctcttgtctcttcttaaaacattaaaacctgaattagttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattatgaaaagaatta 222  Q
    ||||||||||||||||| |||||||||||||| || ||  |||||||||||||||| | ||| | ||||| ||||||||  |||| |||| ||||||||     
T  32900274 atgctcttgtctcttctaaaaacattaaaacccgagtttattagtggttaatttggctcttagaagaaacgaattcattaaaaaagtatgtaaagaattg 32900373  T
Q  223 caggtatgaaattatgaagaaa 244  Q
     || ||||||||||||||||||    
T  32900374 tagttatgaaattatgaagaaa 32900395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 32894500 - 32894433
Alignment:
Q  149 aaaacctgaattagttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattatgaaaa 216  Q
    ||||||||||||  ||| ||||||||||| |||| ||| |||||| ||||||| ||||||||||||||    
T  32894500 aaaacctgaatttattaatggttaatttgattttaaaaagaaacatattcattacaaaattatgaaaa 32894433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 9457744 - 9457806
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaaca 329  Q
    ||||||| |||||||||||||||||||||||||||| | || ||| ||||| ||| |||||||    
T  9457744 tttaagagttgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtatcgcaaca 9457806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 9461841 - 9461903
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaaca 329  Q
    ||||||| |||||||||||||||||||||||||||| | || ||| ||||| ||| |||||||    
T  9461841 tttaagagttgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtatcgcaaca 9461903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 24909049 - 24909103
Alignment:
Q  273 atttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaa 327  Q
    ||||||||| |||||||||||||||||||| | |||||  |||||||||||||||    
T  24909049 atttgtgcattgttgtgattaattcacaccgcaacgacttcaatctgtaacgcaa 24909103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 24909141 - 24909195
Alignment:
Q  273 atttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaa 327  Q
    ||||||||| |||||||||||||||||||| | |||||  |||||||||||||||    
T  24909141 atttgtgcattgttgtgattaattcacaccgcaacgacttcaatctgtaacgcaa 24909195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 26828603 - 26828661
Alignment:
Q  273 atttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaacatc 331  Q
    |||||||||||||||||||||||| ||||| |||| |  ||||||||||| ||||||||    
T  26828603 atttgtgcaatgttgtgattaatttacaccgcgacaataacaatctgtaatgcaacatc 26828661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 16424973 - 16424898
Alignment:
Q  163 ttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattatgaaaagaattacaggtatgaaattatga 239  Q
    ||||||||||| |||||| ||| | |||||||||||||| |||||||| ||||| |||| ||  |||||||||||||    
T  16424973 ttagtggttaaattggttcttagaagaaacaaattcattacaaaattaagaaaataatttca-ttatgaaattatga 16424898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 9032495 - 9032444
Alignment:
Q  276 tgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaa 327  Q
    ||||||||||||| | ||||||||||| |||||||| ||||| |||||||||    
T  9032495 tgtgcaatgttgttagtaattcacaccgcgacgaccgcaatcagtaacgcaa 9032444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 329
Target Start/End: Complemental strand, 3722464 - 3722410
Alignment:
Q  275 ttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaaca 329  Q
    |||||||||||| ||||||||||| ||   ||||||| |||||||||||||||||    
T  3722464 ttgtgcaatgttttgattaattcatacagtgacgacctcaatctgtaacgcaaca 3722410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 16441212 - 16441166
Alignment:
Q  188 gaaacaaattcattgcaaaattatgaaaagaattacaggtatgaaat 234  Q
    |||||||||||||| |||||||| ||||| |||||||| ||||||||    
T  16441212 gaaacaaattcattacaaaattaagaaaataattacagttatgaaat 16441166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 32617610 - 32617560
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatc 317  Q
    ||||||| |||||||||||||||||||||| ||||| |||| ||| |||||    
T  32617610 tttaagagttgtgcaatgttgtgattaatttacaccgcgacaaccgcaatc 32617560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 26828436 - 26828516
Alignment:
Q  130 tgtctcttcttaaaacattaaaacctgaattagttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattat 211  Q
    |||||||||| |||||||||||| |||||||  | |||||||| |||| |||| | | | |||||||||||| |||||||||    
T  26828436 tgtctcttctaaaaacattaaaatctgaatttatcagtggttagtttgattttaagaag-aacaaattcattacaaaattat 26828516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 963102 - 963138
Alignment:
Q  282 atgttgtgattaattcacaccacgacgaccacaatct 318  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  963102 atgttgtgattaattcacaccacgacaaccgcaatct 963138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 12990644 - 12990684
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgac 307  Q
    ||||||| |||||||||||||||| ||||||||||| ||||    
T  12990644 tttaagagttgtgcaatgttgtgactaattcacaccgcgac 12990684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 37794691 - 37794629
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaaca 329  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||    
T  37794691 tttaagagttgtgcaatgttgtgattaattcacaccacgacaaccgcaatctgtatcgcaaca 37794629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 5430278 - 5430342
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaacatc 331  Q
    ||||||| ||||||||| |||||||||||||||||| |||| |||||||||||||| ||||||||    
T  5430278 tttaagagttgtgcaatattgtgattaattcacaccgcgacaaccacaatctgtaatgcaacatc 5430342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 17989027 - 17988965
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaaca 329  Q
    ||||||| ||||||||| |||||||||||||||||| |||| ||| ||||| ||| |||||||    
T  17989027 tttaagagttgtgcaatattgtgattaattcacacctcgacaaccgcaatccgtatcgcaaca 17988965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 22588147 - 22588202
Alignment:
Q  189 aaacaaattcattgcaaaattatgaaaagaattacaggtatgaaattatgaagaaa 244  Q
    ||||||||||||| |||||||||||||||| ||| || |||||| |||| ||||||    
T  22588147 aaacaaattcattacaaaattatgaaaagagttatagttatgaacttattaagaaa 22588202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 35016363 - 35016301
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaaca 329  Q
    ||||||| ||||| |||||||||||||||||||||| |||| ||| || | |||| |||||||    
T  35016363 tttaagagttgtgtaatgttgtgattaattcacaccgcgacaaccgcagtttgtatcgcaaca 35016301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 42237598 - 42237556
Alignment:
Q  269 taagatttgtgcaatgttgtgattaattcacaccacgacgacc 311  Q
    ||||||||||||||||||||| |||||||||||| ||| ||||    
T  42237598 taagatttgtgcaatgttgtggttaattcacaccgcgaagacc 42237556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 19263862 - 19263895
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcaca 300  Q
    ||||||| ||||||||||||||||||||||||||    
T  19263862 tttaagaattgtgcaatgttgtgattaattcaca 19263895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 6196609 - 6196517
Alignment:
Q  129 ttgtctcttcttaaaacattaaaacctgaattagttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattatgaaaagaatt 221  Q
    |||| |||||| |||||||||||||||  |||  |||||||||||||||||||||| | |||||||||||||    || ||||||||||||||    
T  6196609 ttgtttcttctaaaaacattaaaacctagatttattagtggttaatttggtttttagaagaaacaaattcatcaataagttatgaaaagaatt 6196517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 20762806 - 20762748
Alignment:
Q  273 atttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaacatc 331  Q
    ||||||||| |||| ||||||||||||||| |||||||| ||||| |||||||||||||    
T  20762806 atttgtgcattgttctgattaattcacaccgcgacgaccgcaatcagtaacgcaacatc 20762748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 331
Target Start/End: Original strand, 6196698 - 6196760
Alignment:
Q  269 taagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaacatc 331  Q
    ||||||||||||| |||||||||||| ||||||||| |||||| |||| ||||| ||| ||||    
T  6196698 taagatttgtgcattgttgtgattaactcacaccacaacgaccgcaatatgtaatgcagcatc 6196760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 14370815 - 14370853
Alignment:
Q  269 taagatttgtgcaatgttgtgattaattcacaccacgac 307  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  14370815 taagagttgtgcaatgttgtgattaattcacaccacgac 14370853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 7154296 - 7154256
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgac 307  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  7154296 tttaagacttgtgcaatgttgtgattaattcacatcacgac 7154256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 13402212 - 13402268
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaac 323  Q
    ||||||| ||||| |||||||||||||||||||||| |||| ||| ||||| |||||    
T  13402212 tttaagagttgtgtaatgttgtgattaattcacaccgcgacaaccgcaatccgtaac 13402268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 45191652 - 45191599
Alignment:
Q  270 aagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaac 323  Q
    |||| |||||||| || |||||||| |||||||||||| ||| |||||||||||    
T  45191652 aagagttgtgcaacgtagtgattaactcacaccacgacaaccgcaatctgtaac 45191599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 7411475 - 7411419
Alignment:
Q  163 ttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattatgaaaagaa 219  Q
    ||||||||||||||| ||||| || |  ||||||||||| ||| |||||||||||||    
T  7411475 ttagtggttaatttgattttttaaagtgacaaattcattacaagattatgaaaagaa 7411419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 13396914 - 13396954
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgac 307  Q
    ||||||| ||||| |||||||||||||||||||||| ||||    
T  13396914 tttaagagttgtgtaatgttgtgattaattcacaccgcgac 13396954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 9771926 - 9771984
Alignment:
Q  273 atttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaacatc 331  Q
    |||||||||||||||||||||||||||| | ||||||||||||||  ||| ||||||||    
T  9771926 atttgtgcaatgttgtgattaattcacaacgcgacgaccacaatccataaggcaacatc 9771984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 302
Target Start/End: Complemental strand, 26660656 - 26660621
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacacc 302  Q
    ||||||| ||||||||||||||||||||||||||||    
T  26660656 tttaagagttgtgcaatgttgtgattaattcacacc 26660621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 302
Target Start/End: Complemental strand, 26766627 - 26766592
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacacc 302  Q
    ||||||| ||||||||||||||||||||||||||||    
T  26766627 tttaagagttgtgcaatgttgtgattaattcacacc 26766592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 2718805 - 2718863
Alignment:
Q  273 atttgtgcaatgttgtgattaattcacacc-acgacgaccacaatctgtaacgcaacat 330  Q
    ||||||| || ||||||||||||||||||| |||| ||||| ||||| |||||||||||    
T  2718805 atttgtgaaaggttgtgattaattcacaccaacgatgaccataatctctaacgcaacat 2718863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 2918337 - 2918265
Alignment:
Q  148 taaaacctgaattagttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattatgaaaagaatt 221  Q
    |||||||||||||| ||||| ||||| ||| |||||| | | |||| ||||||| ||||||||||| |||||||    
T  2918337 taaaacctgaattaattagtagttaacttgatttttagaag-aacacattcattacaaaattatgagaagaatt 2918265  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 2919326 - 2919254
Alignment:
Q  148 taaaacctgaattagttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattatgaaaagaatt 221  Q
    |||||||||||||| ||||| ||||| ||| |||||| | | |||| ||||||| ||||||||||| |||||||    
T  2919326 taaaacctgaattaattagtagttaacttgatttttagaag-aacacattcattacaaaattatgagaagaatt 2919254  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 298
Target Start/End: Complemental strand, 6134250 - 6134221
Alignment:
Q  269 taagatttgtgcaatgttgtgattaattca 298  Q
    ||||||||||||||||||||||||||||||    
T  6134250 taagatttgtgcaatgttgtgattaattca 6134221  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 27999346 - 27999375
Alignment:
Q  194 aattcattgcaaaattatgaaaagaattac 223  Q
    ||||||||||||||||||||||||||||||    
T  27999346 aattcattgcaaaattatgaaaagaattac 27999375  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 9177725 - 9177757
Alignment:
Q  270 aagatttgtgcaatgttgtgattaattcacacc 302  Q
    |||| ||||||||||||||||||||||||||||    
T  9177725 aagagttgtgcaatgttgtgattaattcacacc 9177757  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 44652872 - 44652818
Alignment:
Q  123 atgctcttgtctcttcttaaaacattaaaacctgaattagttagtggttaatttg 177  Q
    ||||||||||||||||| |||| |||||||||| ||||| |||||||||||||||    
T  44652872 atgctcttgtctcttctaaaaatattaaaacctaaattaattagtggttaatttg 44652818  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 304
Target Start/End: Original strand, 53527203 - 53527232
Alignment:
Q  275 ttgtgcaatgttgtgattaattcacaccac 304  Q
    ||||||||||||||||||||||||||||||    
T  53527203 ttgtgcaatgttgtgattaattcacaccac 53527232  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 327
Target Start/End: Complemental strand, 11783446 - 11783386
Alignment:
Q  267 tttaagatttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaa 327  Q
    ||||||| |||||||||||||| |||| ||||||   |||| ||||||||| |||||||||    
T  11783446 tttaagagttgtgcaatgttgtaattacttcacaaagcgacaaccacaatccgtaacgcaa 11783386  T

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Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 75594 - 75651
Alignment:
Q  273 atttgtgcaatgttgtgattaattcacaccacgacgaccacaatctgtaacgcaacat 330  Q
    ||||||||| |||| ||||||||||||||| |||||||| ||||| ||||||||||||    
T  75594 atttgtgcattgttctgattaattcacaccgcgacgaccgcaatcagtaacgcaacat 75651  T

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Target: scaffold0472 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 304
Target Start/End: Complemental strand, 11841 - 11806
Alignment:
Q  269 taagatttgtgcaatgttgtgattaattcacaccac 304  Q
    ||||||||||||||||||||| ||||||||||||||    
T  11841 taagatttgtgcaatgttgtggttaattcacaccac 11806  T

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Target: scaffold0526 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 301
Target Start/End: Original strand, 3377 - 3405
Alignment:
Q  273 atttgtgcaatgttgtgattaattcacac 301  Q
    |||||||||||||||||||||||||||||    
T  3377 atttgtgcaatgttgtgattaattcacac 3405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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