View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0712_high_3 (Length: 509)
Name: NF0712_high_3
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0712_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 30 - 505
Target Start/End: Complemental strand, 33530355 - 33529880
Alignment:
| Q |
30 |
aatgtagctcttacagttcagcctaattatagcaaggcaatgttgcggcgagctgattgcaatgctaaggtgctttaatttctaaattaatattaaattt |
129 |
Q |
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| T |
33530355 |
aatgtagctcttacagttcagcctaattatagcaaggcaatgttgcggcgagctgattgcaatgctaaggtgctttaatttctaaattaatattaaactt |
33530256 |
T |
|
| Q |
130 |
tactatatacttggtttccgatggtttaataactcgttattttcttttgtttttcgcatataatagttggaaagatgggaagctgcaattcaagactatg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33530255 |
tactatatacttggtttccgatggtttaataactcgttattttcttttgtttttcgcatataatagttggaaagatgggaagctgcaattcaagactatg |
33530156 |
T |
|
| Q |
230 |
aaatgttgataagagaaaagccaggcgatgaggaggttgctagggctttgtttgaaatccaactaaaactcaaaatgctacgcggcgaagatgttaagga |
329 |
Q |
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| T |
33530155 |
aaatgttgataagagaaaagccaggcgatgaggaggttgctagggctttgtttgaaatccaactaaaactcaaaatgctacgcggcgaagatgttaagga |
33530056 |
T |
|
| Q |
330 |
cttgaaatttggttcaaatttggtttgcatctcaagcaatgataggtttagacattatgtaacttcacctggtaagtcatgtttgattccatattatatg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33530055 |
cttgaaatttggttcaaatttggtttgcatctcaagtaatgataggtttagacattatgtaacttcacctggtaagtcatgtttgattccatattatatg |
33529956 |
T |
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| Q |
430 |
caatcgaatttaaacattatgacacaacaaaaacttatcagttgtggataaattaacaggtatgtctgtgctgctc |
505 |
Q |
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| T |
33529955 |
caatcaaatttaaacattatgacacaacaaaaacttatcagttgtggataaattaacaggtatgtctgtggtgctc |
33529880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 192 - 405
Target Start/End: Complemental strand, 26207769 - 26207556
Alignment:
| Q |
192 |
atagttggaaagatgggaagctgcaattcaagactatgaaatgttgataagagaaaagccaggcgatgaggaggttgctagggctttgtttgaaatccaa |
291 |
Q |
| |
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|||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||||| ||||| || || || |||||||||||||| | |
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| T |
26207769 |
atagttggaacgatgggaagttgccattcaagactacgaaatgttgataagagaaaagccaggggatgaagaagtggcaagggctttgtttgaggctcgg |
26207670 |
T |
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| Q |
292 |
ctaaaactcaaaatgctacgcggcgaagatgttaaggacttgaaatttggttcaaatttggtttgcatctcaagcaatgataggtttagacattatgtaa |
391 |
Q |
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|| ||||||| |||||||| || |||||| ||||||| || |||||||||||||||||||||| ||||||||| |||||| | || ||||||||||||| |
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| T |
26207669 |
ctccaactcaagatgctacgtggtgaagatattaaggatttaaaatttggttcaaatttggttttcatctcaagtaatgatcgtttcagacattatgtaa |
26207570 |
T |
|
| Q |
392 |
cttcacctggtaag |
405 |
Q |
| |
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| || ||||||||| |
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| T |
26207569 |
cctcgcctggtaag |
26207556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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