View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0712_high_4 (Length: 447)

Name: NF0712_high_4
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0712_high_4
NF0712_high_4
[»] chr2 (8 HSPs)
chr2 (215-391)||(409005-409181)
chr2 (102-189)||(408861-408947)
chr2 (329-391)||(958496-958558)
chr2 (331-391)||(997510-997570)
chr2 (331-391)||(1398649-1398709)
chr2 (328-391)||(966287-966350)
chr2 (345-381)||(1013169-1013205)
chr2 (331-391)||(1402332-1402392)
[»] chr3 (1 HSPs)
chr3 (326-391)||(45811346-45811411)
[»] chr7 (2 HSPs)
chr7 (323-391)||(12094075-12094143)
chr7 (323-391)||(12104415-12104483)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 215 - 391
Target Start/End: Original strand, 409005 - 409181
Alignment:
Q  215 aaaccctagtttgttgttcctattttatttcttataaaagcgaatgctttcagttcactgccgcggtgaagaaccgacgtaacagtatgtctgagcacaa 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  409005 aaaccctagtttgttgttcctattttatttcttataaaagcgaatgctttcagttcactgccgctgtgaagaaccgacgtaacagtatgtctgagcacaa 409104  T
Q  315 catgtcgatggcggtagataggatcggaagtttaccagacgagattctgattcacattctctcttttgttcccacca 391  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  409105 catgtcgatggcggtagataggattggaagtttaccagacgagattctgattcacattctctcttttgttcccacca 409181  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 408861 - 408947
Alignment:
Q  102 tgtattcaattggttaatgaactccaccaatgatgaatggtggttaataagtggaaacaattacttactttataacccaattcggctg 189  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  408861 tgtattcaattggttaatgaactccaccaaagatgaatggtggttaataagt-gaaacaattacttactttataacccaattcggctg 408947  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 329 - 391
Target Start/End: Complemental strand, 958558 - 958496
Alignment:
Q  329 tagataggatcggaagtttaccagacgagattctgattcacattctctcttttgttcccacca 391  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||    
T  958558 tagataggatcggaagtttggcggacgagattctgattcacattctctcttttgttcccacca 958496  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 391
Target Start/End: Complemental strand, 997570 - 997510
Alignment:
Q  331 gataggatcggaagtttaccagacgagattctgattcacattctctcttttgttcccacca 391  Q
    |||||||||||||||||||| |||||||| || || |||||||||||||||||||||||||    
T  997570 gataggatcggaagtttaccggacgagatcctaatccacattctctcttttgttcccacca 997510  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 391
Target Start/End: Original strand, 1398649 - 1398709
Alignment:
Q  331 gataggatcggaagtttaccagacgagattctgattcacattctctcttttgttcccacca 391  Q
    |||||||| ||||||||||||||||| ||||||| || ||| ||||||| |||||||||||    
T  1398649 gataggataggaagtttaccagacgatattctgactcgcatactctcttctgttcccacca 1398709  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 391
Target Start/End: Complemental strand, 966350 - 966287
Alignment:
Q  328 gtagataggatcggaagtttaccagacgagattctgattcacattctctcttttgttcccacca 391  Q
    ||||||||||||||||||||||| || || |   |||||||| |||||||||||||||||||||    
T  966350 gtagataggatcggaagtttaccggatgatacattgattcacgttctctcttttgttcccacca 966287  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 1013205 - 1013169
Alignment:
Q  345 tttaccagacgagattctgattcacattctctctttt 381  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1013205 tttaccagacgggattctgattcacattctctctttt 1013169  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 391
Target Start/End: Original strand, 1402332 - 1402392
Alignment:
Q  331 gataggatcggaagtttaccagacgagattctgattcacattctctcttttgttcccacca 391  Q
    |||||| | ||||||||||||||||| ||||||| || ||| ||||||| |||||||||||    
T  1402332 gataggttaggaagtttaccagacgatattctgactcgcatactctcttctgttcccacca 1402392  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 45811411 - 45811346
Alignment:
Q  326 cggtagataggatcggaagtttaccagacgagattctgattcacattctctcttttgttcccacca 391  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  45811411 cggtagatagaatcggaactttaccagacgagattctgattcacattctctcattcgttcccacca 45811346  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 12094075 - 12094143
Alignment:
Q  323 tggcggtagataggatcggaagtttaccagacgagattctgattcacattctctcttttgttcccacca 391  Q
    ||||||||||||||||| | | |||||||||||| || |||||||||||||| |||| | |||||||||    
T  12094075 tggcggtagataggatcagcaatttaccagacgatatcctgattcacattctgtcttcttttcccacca 12094143  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 12104415 - 12104483
Alignment:
Q  323 tggcggtagataggatcggaagtttaccagacgagattctgattcacattctctcttttgttcccacca 391  Q
    |||||||||||| |||| | | |||| ||||||| || ||||||||||||||||||||| |||||||||    
T  12104415 tggcggtagatatgatcagcaatttatcagacgatatcctgattcacattctctcttttcttcccacca 12104483  T

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