View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0712_high_7 (Length: 378)

Name: NF0712_high_7
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0712_high_7
NF0712_high_7
[»] chr7 (7 HSPs)
chr7 (30-352)||(22534039-22534361)
chr7 (30-352)||(22525505-22525827)
chr7 (231-277)||(7327775-7327821)
chr7 (231-282)||(20456102-20456153)
chr7 (294-349)||(24391071-24391126)
chr7 (312-346)||(20414584-20414618)
chr7 (313-351)||(46769050-46769088)
[»] scaffold0128 (3 HSPs)
scaffold0128 (228-349)||(8199-8320)
scaffold0128 (231-332)||(25251-25352)
scaffold0128 (228-269)||(3740-3781)
[»] chr5 (1 HSPs)
chr5 (297-349)||(42297807-42297859)
[»] chr4 (2 HSPs)
chr4 (231-277)||(2910627-2910673)
chr4 (231-271)||(11982095-11982135)
[»] chr1 (1 HSPs)
chr1 (294-346)||(39379425-39379477)


Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 30 - 352
Target Start/End: Original strand, 22534039 - 22534361
Alignment:
Q  30 ccttactaccagttgtgggacaacgtagttcccaatattcttggttcatgcaatggattgcttttcttgcgcggttatgatcatgatgagggtactaaat 129  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22534039 ccttaccaccagttgtgggacaacgtagttcccaatattcttggttcatgcaatggattgcttttcttgcgcggttatgatcatgatgagggtactaaat 22534138  T
Q  130 ttcgaagagtattgtgccgcttctggaaccctgccacgagaacaatatccgatatattaagaactgatttcagttgggatgattgggaatttcatccatt 229  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22534139 ttcgaagagtattgtgccgcttctggaaccccgccacgagaacaatatctgatatattaagaactgatttcagttgggatgattgggaatttcatccgtt 22534238  T
Q  230 cgtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgtttgg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22534239 cgtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgtttgg 22534338  T
Q  330 agaactattaaaagttttcctga 352  Q
    |||||||||||||||||||||||    
T  22534339 agaactattaaaagttttcctga 22534361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 352
Target Start/End: Complemental strand, 22525827 - 22525505
Alignment:
Q  30 ccttactaccagttgtgggacaacgtagttcccaatattcttggttcatgcaatggattgcttttcttgcgcggttatgatcatgatgagggtactaaat 129  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  22525827 ccttactaccggttgtgggacaaggtagttcccattattcttggttcatgcaatggattgcttttcttgcgcggttatggtcatggtgagggtactaaat 22525728  T
Q  130 ttcgaagagtattgtgccgcttctggaaccctgccacgagaacaatatccgatatattaagaactgatttcagttgggatgattgggaatttcatccatt 229  Q
    ||  || |||||| ||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||  ||  |||||||| |||||| ||   ||    
T  22525727 ttaaaaaagtattatgccgcttctgaaaccccgctacgagaacaatatccgatatattgagaactgatttcgattatgatgattgcgaattttatgagtt 22525628  T
Q  230 cgtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgtttgg 329  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||| ||||| |||||||||||||||||    
T  22525627 tgtgtttggttatgataattcaaccgacacctataaagttgtagccttaaattcaggcggtaatgatgtgagagtcattaccatgggtgataatgtttgg 22525528  T
Q  330 agaactattaaaagttttcctga 352  Q
    ||||||||||||| |||||||||    
T  22525527 agaactattaaaacttttcctga 22525505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 7327775 - 7327821
Alignment:
Q  231 gtgtttggttatgataattcaaccgacacctataaggttgtagcctt 277  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||    
T  7327775 gtgttttgttatgataattcaaccaacacttataaggttgtagcctt 7327821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 20456102 - 20456153
Alignment:
Q  231 gtgtttggttatgataattcaaccgacacctataaggttgtagccttaaatt 282  Q
    |||||| ||| |||||||||||||||||| ||||||||||| ||||| ||||    
T  20456102 gtgttttgttttgataattcaaccgacacatataaggttgtggccttgaatt 20456153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 24391071 - 24391126
Alignment:
Q  294 gatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcc 349  Q
    ||||||||||| ||||  |||||||||||| ||||||||| |||| ||||||||||    
T  24391071 gatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 24391126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 20414584 - 20414618
Alignment:
Q  312 ttgggtgataatgtttggagaactattaaaagttt 346  Q
    |||||||||||||||||||||| ||||||||||||    
T  20414584 ttgggtgataatgtttggagaagtattaaaagttt 20414618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 46769050 - 46769088
Alignment:
Q  313 tgggtgataatgtttggagaactattaaaagttttcctg 351  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  46769050 tgggtgataatatttggagaactattcaaagttttcctg 46769088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 228 - 349
Target Start/End: Original strand, 8199 - 8320
Alignment:
Q  228 ttcgtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgttt 327  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||| ||||||| ||||   ||||| ||  ||||||||||||  ||||||||||||||||    
T  8199 ttcgtgtttggttatgatagttcaaccgacacttataaagttgtggccttaagttcaactggtaacgaaatgagagtctttagtttgggtgataatgttt 8298  T
Q  328 ggagaactattaaaagttttcc 349  Q
    |||||  |||| |||| |||||    
T  8299 ggagatatattcaaagatttcc 8320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 332
Target Start/End: Original strand, 25251 - 25352
Alignment:
Q  231 gtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgtttgga 330  Q
    |||||||||||||| | || ||| ||||| |||||||||||  | |||| ||||   ||||| || |||| ||||||||  |||||||||||||||||||    
T  25251 gtgtttggttatgagagtttaactgacacttataaggttgtgtcattaagttcaactggtaacgaagtgaaagtctttagtttgggtgataatgtttgga 25350  T
Q  331 ga 332  Q
    ||    
T  25351 ga 25352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 3740 - 3781
Alignment:
Q  228 ttcgtgtttggttatgataattcaaccgacacctataaggtt 269  Q
    |||||||||| ||||||||||||||||||||  |||||||||    
T  3740 ttcgtgtttgtttatgataattcaaccgacatttataaggtt 3781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 42297807 - 42297859
Alignment:
Q  297 gtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcc 349  Q
    |||||||||||||  ||||  ||||||||||||||||||||| ||||||||||    
T  42297807 gtgagagtctttagtttggaagataatgtttggagaactattcaaagttttcc 42297859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 2910627 - 2910673
Alignment:
Q  231 gtgtttggttatgataattcaaccgacacctataaggttgtagcctt 277  Q
    |||||||||||||||||||||||  |||| ||||||||||| |||||    
T  2910627 gtgtttggttatgataattcaactcacacttataaggttgtggcctt 2910673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 11982135 - 11982095
Alignment:
Q  231 gtgtttggttatgataattcaaccgacacctataaggttgt 271  Q
    ||||||||||||| |||||||| |||||| |||||||||||    
T  11982135 gtgtttggttatgttaattcaagcgacacttataaggttgt 11982095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 39379477 - 39379425
Alignment:
Q  294 gatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttt 346  Q
    ||||||||||| || |  |||||||||||||||||||||| |||| |||||||    
T  39379477 gatgtgagagttttcagtttgggtgataatgtttggagaaatattgaaagttt 39379425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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