View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0712_high_8 (Length: 371)
Name: NF0712_high_8
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0712_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 5 - 359
Target Start/End: Original strand, 5437685 - 5438020
Alignment:
| Q |
5 |
caaactcaactatcataattaagaaagtgagaatgaaggaatcatcacaacagtaaagacataaggcatccatcctatggtacaaatccaaacacaaata |
104 |
Q |
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| T |
5437685 |
caaactcaactatcataattaagaaagtgagaatgaaggaatcatcacaacagtaaagacataaggcatccatcctatggtacaaatccgaacacaaata |
5437784 |
T |
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| Q |
105 |
acatgaaagaagcaaaagtattctatgttgaactcaaatttcagaaacatgaatgtattggtagaagatgaaaataaacagattcagaataacaaagaaa |
204 |
Q |
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| T |
5437785 |
acatgaaagaagcaaaagtattc-------------------agaaacatgaatgtatcggtagaagatgaaaataaacagattcagaataacaaagaaa |
5437865 |
T |
|
| Q |
205 |
ataaaagaaacaatgctagaaattgcagattctgttatactcggatatatggctatcccacaaagtgccccctccctattcgtaaccgcctcccttcttc |
304 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5437866 |
ataaaagaaacaacactagaaattgcagattctgttatactcggatatatggctatcccacaaagtgccccctccctattcgtaaccgcctcccttcttc |
5437965 |
T |
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| Q |
305 |
ccacttttccagtaccccactcaatttccactcagcataacaatctcatccccta |
359 |
Q |
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| T |
5437966 |
ccacttttccagtaccccactcaatttccactcagcataacaatctcatccccta |
5438020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 359
Target Start/End: Original strand, 5430540 - 5430664
Alignment:
| Q |
238 |
gttatactcggatatatggctatcccacaaag---tgccccctccctattcgtaaccgcctcccttcttcccacttttccagtaccccactcaatttcca |
334 |
Q |
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| T |
5430540 |
gttaaactcggatttctggctatcccacaaagatgtgtccccttcctattcttaacgacctcccttcatcccatttttcctggtgcccactcaatttcta |
5430639 |
T |
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| Q |
335 |
ctcagcataacaatctcatccccta |
359 |
Q |
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| T |
5430640 |
cttagcataaccatcccacccccta |
5430664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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