View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0712_high_9 (Length: 368)

Name: NF0712_high_9
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0712_high_9
NF0712_high_9
[»] chr7 (4 HSPs)
chr7 (29-322)||(43314394-43314687)
chr7 (163-288)||(4299590-4299715)
chr7 (163-258)||(22114707-22114801)
chr7 (163-258)||(40509277-40509371)
[»] chr3 (3 HSPs)
chr3 (29-322)||(21530454-21530747)
chr3 (159-322)||(35166545-35166707)
chr3 (163-288)||(44602124-44602248)
[»] chr8 (1 HSPs)
chr8 (29-322)||(17594366-17594658)
[»] chr4 (5 HSPs)
chr4 (29-322)||(34742644-34742936)
chr4 (163-288)||(23103059-23103184)
chr4 (163-288)||(45535988-45536113)
chr4 (163-288)||(42809296-42809421)
chr4 (163-288)||(49343073-49343198)
[»] chr6 (1 HSPs)
chr6 (129-324)||(35004711-35004909)
[»] scaffold0201 (1 HSPs)
scaffold0201 (163-288)||(21617-21742)
[»] chr1 (2 HSPs)
chr1 (163-246)||(27557251-27557334)
chr1 (163-288)||(14471309-14471434)
[»] chr2 (1 HSPs)
chr2 (270-322)||(25405592-25405644)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 29 - 322
Target Start/End: Complemental strand, 43314687 - 43314394
Alignment:
Q  29 aaaatctgactcattcctcttcttcctctctcttacgataccagcctcctattctctcttcaaacaacccaaccactaccaccagcttaccggcgattcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  43314687 aaaatctgactcattcctcttcttcctctctcttacgataccagcctccaattctctcttcaaacaacccaaccaccgccaccagcttaccggcgattcc 43314588  T
Q  129 ttggccgccattctcaccgatcgacgaaaatgaaaccattttctttttccactcgacaagagctttccgttggtccaattagtttcacgaaacgagcaac 228  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  43314587 ttggccgccattctcaccgattgacgaaaatgaaaccattttctttttccactcgacgagagctttccgttggtccaattagtttcacgaaaggagcaac 43314488  T
Q  229 ttttctgttgaccctttttcttcctccgccgcactaaggtcttttccggtcaccatacttctctttccttcttcttcttttatgcttcattcat 322  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43314487 ttttctgttgaccctttttcttcctccgccgcagtaaggtcttttccggtcaccatacatctctttccttcttcttcttttatgcttcattcat 43314394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 288
Target Start/End: Complemental strand, 4299715 - 4299590
Alignment:
Q  163 accattttctttttccactcgacaagagctttccgttggtccaattagtttcacgaaacgagcaacttttctgttgaccctttttcttcctccgccgcac 262  Q
    |||||||||||| ||| |||||| || ||||||| ||||||||| || |||||||||| || ||||||||  |   |||| |||||||||||||||||      
T  4299715 accattttctttatcctctcgactagggctttccattggtccaactaatttcacgaaaggaacaactttttcgccaaccc-ttttcttcctccgccgccg 4299617  T
Q  263 taa-ggtcttttccggtcaccatactt 288  Q
     || || ||||||||| ||||||||||    
T  4299616 gaaggggcttttccggccaccatactt 4299590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 258
Target Start/End: Complemental strand, 22114801 - 22114707
Alignment:
Q  163 accattttctttttccactcgacaagagctttccgttggtccaattagtttcacgaaacgagcaacttttctgttgaccctttttcttcctccgcc 258  Q
    |||||||||||| ||| |||||| || | ||||| ||||||||| || |||||||||| || ||||||||  |  || ||||||||||||||||||    
T  22114801 accattttctttatcctctcgactagggttttccattggtccaactaatttcacgaaaggaacaactttttagccga-cctttttcttcctccgcc 22114707  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 258
Target Start/End: Complemental strand, 40509371 - 40509277
Alignment:
Q  163 accattttctttttccactcgacaagagctttccgttggtccaattagtttcacgaaacgagcaacttttctgttgaccctttttcttcctccgcc 258  Q
    |||||||||||| ||| |||||| || | ||||| ||||||||| || |||||||||| || ||||||||  |  || ||||||||||||||||||    
T  40509371 accattttctttatcctctcgactagggttttccattggtccaactaatttcacgaaaggaacaactttttagccga-cctttttcttcctccgcc 40509277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 29 - 322
Target Start/End: Original strand, 21530454 - 21530747
Alignment:
Q  29 aaaatctgactcattcctcttcttcctctctcttacgataccagcctcctattctctcttcaaacaacccaaccactaccaccagcttaccggcgattcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  21530454 aaaatctgactcattcctcttcttcctctctcttacgataccagcctccaattctctcttcaaacaacccaaccaccgccaccagcttaccggcgattcc 21530553  T
Q  129 ttggccgccattctcaccgatcgacgaaaatgaaaccattttctttttccactcgacaagagctttccgttggtccaattagtttcacgaaacgagcaac 228  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  21530554 ttggccgccattctcaccgattgacgaaaatgaaaccattttctttttccactcgacgagagctttccgttggtccaattagtttcacgaaaggagcaac 21530653  T
Q  229 ttttctgttgaccctttttcttcctccgccgcactaaggtcttttccggtcaccatacttctctttccttcttcttcttttatgcttcattcat 322  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21530654 ttttctgttgaccctttttcttcctccgccgcagtaaggtcttttccggtcaccatacatctctttccttcttcttcttttatgcttcattcat 21530747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 159 - 322
Target Start/End: Original strand, 35166545 - 35166707
Alignment:
Q  159 tgaaaccattttctttttccactcgacaagagctttccgttggtccaattagtttcacgaaacgagcaacttttctgttgaccctttttcttcctccgcc 258  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||    
T  35166545 tgaaaccattttctttttccactcgatgagagctttccgttggtccaattaatttcacgaaaggagcaacttttctgttgaccc-ttttcttcctccgcc 35166643  T
Q  259 gcactaaggtcttttccggtcaccatacttctctttccttcttcttcttttatgcttcattcat 322  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35166644 gcagtaaggtcttttccggtcaccatacatctctttccttcttcttcttttatgcttcattcat 35166707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 288
Target Start/End: Original strand, 44602124 - 44602248
Alignment:
Q  163 accattttctttttccactcgacaagagctttccgttggtccaattagtttcacgaaacgagcaacttttctgttgaccctttttcttcctccgccgcac 262  Q
    |||||||||||| ||| |||||| || ||||||| |||||||||||| |||||| ||| || |  |||||  || ||||| |||||||||||||||||      
T  44602124 accattttctttatcctctcgacgagggctttccattggtccaattaatttcacaaaaggaacggctttttggtcgaccc-ttttcttcctccgccgcgg 44602222  T
Q  263 taaggtcttttccggtcaccatactt 288  Q
    |||||   ||||||| ||||||||||    
T  44602223 taaggggctttccggccaccatactt 44602248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 29 - 322
Target Start/End: Complemental strand, 17594658 - 17594366
Alignment:
Q  29 aaaatctgactcattcctcttcttcctctctcttacgataccagcctcctattctctcttcaaacaacccaaccactaccaccagcttaccggcgattcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  17594658 aaaatctgactcattcctcttcttcctctctcttacgataccagcctccaattctctcttcaaacaacccaaccaccgccaccagcttaccggcgattcc 17594559  T
Q  129 ttggccgccattctcaccgatcgacgaaaatgaaaccattttctttttccactcgacaagagctttccgttggtccaattagtttcacgaaacgagcaac 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  17594558 ttggccgccattctcaccgatcgacgaaaatgaaaccattttctttttccactcgacgagagctttccgttggtccaattagtttcacgaaaggagcaac 17594459  T
Q  229 ttttctgttgaccctttttcttcctccgccgcactaaggtcttttccggtcaccatacttctctttccttcttcttcttttatgcttcattcat 322  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17594458 ttttctgttgaccc-ttttcttcctccgccgcagtaaggtcttttccggtcaccatacatctctttccttcttcttcttttatgcttcattcat 17594366  T

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Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 29 - 322
Target Start/End: Original strand, 34742644 - 34742936
Alignment:
Q  29 aaaatctgactcattcctcttcttcctctctcttacgataccagcctcctattctctcttcaaacaacccaaccactaccaccagcttaccggcgattcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  34742644 aaaatctgactcattcctcttcttcctctctcttacgataccagcctccaattctctcttcaaacaacccaaccaccgccaccagcttaccggcgattcc 34742743  T
Q  129 ttggccgccattctcaccgatcgacgaaaatgaaaccattttctttttccactcgacaagagctttccgttggtccaattagtttcacgaaacgagcaac 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  34742744 ttggccgccattctcaccgatcgacgaaaatgaaaccattttctttttccactcgacgagagctttccgttggtccaattagtttcacgaaaggagcaac 34742843  T
Q  229 ttttctgttgaccctttttcttcctccgccgcactaaggtcttttccggtcaccatacttctctttccttcttcttcttttatgcttcattcat 322  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34742844 ttttctgttgaccc-ttttcttcctccgccgcagtaaggtcttttccggtcaccatacatctctttccttcttcttcttttatgcttcattcat 34742936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 163 - 288
Target Start/End: Original strand, 23103059 - 23103184
Alignment:
Q  163 accattttctttttccactcgacaagagctttccgttggtccaattagtttcacgaaacgagcaacttttctgttgaccctttttcttcctccgccgcac 262  Q
    |||||||||||| ||| |||||| || ||||||| |||||||||||| |||||||||| || || |||||  || ||||| |||||||||||||||||      
T  23103059 accattttctttatcctctcgacgagggctttccattggtccaattaatttcacgaaaggaacagctttttggtcgaccc-ttttcttcctccgccgcgg 23103157  T
Q  263 taa-ggtcttttccggtcaccatactt 288  Q
    ||| || ||||||||| ||||||||||    
T  23103158 taaggggcttttccggccaccatactt 23103184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 163 - 288
Target Start/End: Complemental strand, 45536113 - 45535988
Alignment:
Q  163 accattttctttttccactcgacaagagctttccgttggtccaattagtttcacgaaacgagcaacttttctgttgaccctttttcttcctccgccgcac 262  Q
    |||||||||||| ||| |||||| || ||||||| |||||||||||| ||| |||||| || ||||||||  || ||||| |||||||||||||||||      
T  45536113 accattttctttatcctctcgacgagggctttccattggtccaattaattttacgaaaggaacaactttttggtcgaccc-ttttcttcctccgccgcgg 45536015  T
Q  263 taa-ggtcttttccggtcaccatactt 288  Q
    ||| || ||||||||| ||||||||||    
T  45536014 taaggggcttttccggccaccatactt 45535988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 288
Target Start/End: Original strand, 42809296 - 42809421
Alignment:
Q  163 accattttctttttccactcgacaagagctttccgttggtccaattagtttcacgaaacgagcaacttttctgttgaccctttttcttcctccgccgcac 262  Q
    |||||||||||| ||| |||||| || ||||||| ||||||||| || ||||| |||| || ||||||||| || |||||||||| ||||||||||||      
T  42809296 accattttctttatcctctcgacgagggctttccattggtccaactaatttcatgaaaggaacaacttttccgtcgacccttttt-ttcctccgccgcgg 42809394  T
Q  263 taa-ggtcttttccggtcaccatactt 288  Q
     || || ||||||||| ||||||||||    
T  42809395 gaaggggcttttccggccaccatactt 42809421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 288
Target Start/End: Original strand, 49343073 - 49343198
Alignment:
Q  163 accattttctttttccactcgacaagagctttccgttggtccaattagtttcacgaaacgagcaacttttctgttgaccctttttcttcctccgccgcac 262  Q
    |||||||||||| ||| ||||||  | ||||||| ||||||||| || |||||||||| || ||||||||  |  ||||| |||||||||||||||||      
T  49343073 accattttctttatcctctcgacttgggctttccattggtccaactaatttcacgaaaggaacaactttttcgccgaccc-ttttcttcctccgccgccg 49343171  T
Q  263 taa-ggtcttttccggtcaccatactt 288  Q
     || || ||||||||| ||||||||||    
T  49343172 gaaggggcttttccggccaccatactt 49343198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 324
Target Start/End: Original strand, 35004711 - 35004909
Alignment:
Q  129 ttggccgccattctcaccgatcgacgaaaatgaaaccattttctttttccactcgacaagagctttccgttggtcca---------attagtttcacgaa 219  Q
    |||| |||||||||||||||| ||  ||||| ||||   ||| ||| ||||||||||||||||||||||||||||||         ||| ||||||||||    
T  35004711 ttggacgccattctcaccgattgagaaaaattaaac---tttttttatccactcgacaagagctttccgttggtccaatttgtttcatttgtttcacgaa 35004807  T
Q  220 acgagcaacttttctgttgaccctttttcttcctccgccgcactaaggtcttttccggtcaccatacttctctttccttcttcttcttttatgcttcatt 319  Q
    | ||| |||||||  |||||||||||||||||| |  ||||  |||||||||||||| | || |||| ||  | ||   |||||||| ||||||||||||    
T  35004808 aggagtaactttttcgttgaccctttttcttcccctaccgcggtaaggtcttttccgattacgatacatcgttgtc---cttcttctcttatgcttcatt 35004904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 288
Target Start/End: Original strand, 21617 - 21742
Alignment:
Q  163 accattttctttttccactcgacaagagctttccgttggtccaattagtttcacgaaacgagcaacttttctgttgaccctttttcttcctccgccgcac 262  Q
    |||||||||||| ||| |||||| || ||||||| ||||||||| || ||||| |||| || ||| ||||| || |||||||||| ||||||||||||      
T  21617 accattttctttatcctctcgacgagggctttccattggtccaactaatttcatgaaaggaacaatttttccgtcgacccttttt-ttcctccgccgcgg 21715  T
Q  263 taa-ggtcttttccggtcaccatactt 288  Q
     || || ||||||||| ||||||||||    
T  21716 gaaggggcttttccggccaccatactt 21742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 27557334 - 27557251
Alignment:
Q  163 accattttctttttccactcgacaagagctttccgttggtccaattagtttcacgaaacgagcaacttttctgttgaccctttt 246  Q
    |||||||||||| ||| |||||| || ||||||| |||||||||||| |||||||||| || || |||||  || |||||||||    
T  27557334 accattttctttatcctctcgacgagggctttccattggtccaattaatttcacgaaaggaacagctttttggtcgaccctttt 27557251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 288
Target Start/End: Original strand, 14471309 - 14471434
Alignment:
Q  163 accattttctttttccactcgacaagagctttccgttggtccaattagtttcacgaaacgagcaacttttctgttgaccctttttcttcctccgccgcac 262  Q
    |||||||||||| ||| |||| | || ||||||| ||||||||| || |||||||||| || ||||||||  |  ||||| |||||||||||||||||      
T  14471309 accattttctttatcctctcgtctagggctttccattggtccaactaatttcacgaaaggaacaactttttcgccgaccc-ttttcttcctccgccgcgg 14471407  T
Q  263 taa-ggtcttttccggtcaccatactt 288  Q
     || || ||||||||| ||||||||||    
T  14471408 gaaggggcttttccggccaccatactt 14471434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 25405644 - 25405592
Alignment:
Q  270 ttttccggtcaccatacttctctttccttcttcttcttttatgcttcattcat 322  Q
    ||||||||||||||||||| | | | |||||| |||||||||| |||||||||    
T  25405644 ttttccggtcaccatacttttatcttcttctttttcttttatgtttcattcat 25405592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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