View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0712_low_1 (Length: 852)

Name: NF0712_low_1
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0712_low_1
NF0712_low_1
[»] chr5 (1 HSPs)
chr5 (53-783)||(34957943-34958664)


Alignment Details
Target: chr5 (Bit Score: 645; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 53 - 783
Target Start/End: Complemental strand, 34958664 - 34957943
Alignment:
Q  53 gcttccactttgttcttgtacttaattacttaattacaatttctatatgtttttcattttcaaaaaacaaaattatgacttttttcgaccctactgacat 152  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34958664 gcttccactttgttattgtacttaattacttaattacaatttctatatgtttttcattttcaaaaaacaaaattatgacttttttcgaccctactgacat 34958565  T
Q  153 atcctgaactagtaagagtgagaatatgcgcatatatagtctttaaaagaaaccacattttcttctattcaatcccaagatcatataataatacttgata 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  34958564 atcctgaactagtaagagtgagaatatgcgcatatatagtctttaaaagaaaccacattttcttctattcaatccaaagatcatataacaatacttgata 34958465  T
Q  253 aatattattatatgttgagattgggtgagtttaatgaaattactgtgattttgtttaagctccgaggagtctcaccgagcattaacatatttcttaatta 352  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34958464 aatattagtatatgttgagattgggtgagtttaatgaaattactgtgattttgtttaagctccgaggagtctcaccgagcattaacatatttcttaatta 34958365  T
Q  353 ttctcataaaagatatatctgtaaactgtaatatctacatatatagtatccatgtttaatcaaatttaatcgtttttcaatctttaaaaaactacacctt 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34958364 ttctcataaaagatatatctgtaaactgtaatatctacatatatagtatccatgtttaatcaaatttaatcgtttttcaatctttaaaaaactacacctt 34958265  T
Q  453 aaaaccaaacatgtgtatctaatctatttgttatgtacgtggtgctgtatatacatttacatacggtttttnnnnnnnggtcctaaacgcattttagatt 552  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  34958264 aaaaccaaacatgtgtatctaatctatttgttatgtacgtggtgctgtatatacatttacatacggtttttaaaaaaaggtcctaaacgcattttagatt 34958165  T
Q  553 accaaatacatattaaagctatttcatatcattaaccacaaagcaactgtggttgagatcgcaccaaccaacaggaccacaattctctgcaacgtaacat 652  Q
    |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     |||||    
T  34958164 acc----acatattaaagctatttcatatcattaaccacaaagcaactgtggttgagatcgcaccaaccaataggaccacaattctctgc-----aacat 34958074  T
Q  653 cattaagacacaaaccatgatttgaaactatattacacaaattgacattcatggaagaagaaaagtttggtaaaatatagcataaatatgggatgaaaaa 752  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34958073 cattaagacacaaaccatgatttgaaactatattacacaaattgacattcatggaagaagaaaagtttggtaaaatatagcataaatatgggatgaaaaa 34957974  T
Q  753 atagatagacccagttcaagaataatctacc 783  Q
    |||||||||||||||| ||||||||| ||||    
T  34957973 atagatagacccagttgaagaataatttacc 34957943  T

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