View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0712_low_10 (Length: 457)
Name: NF0712_low_10
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0712_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 30 - 448
Target Start/End: Original strand, 2022262 - 2022680
Alignment:
| Q |
30 |
atacacacgtgatccagtgaagcctttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggataccttttactgttttatg |
129 |
Q |
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| T |
2022262 |
atacacacgtgatccagtgaagcctttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggataccttttactgttttatg |
2022361 |
T |
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| Q |
130 |
gctccgaattctcctaatccagaagatttaccatcagtatgcaggtatgttagatgcaatatttaannnnnnnagattaactattgcacaagcatagtga |
229 |
Q |
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| T |
2022362 |
gctccgaattctcctaatccagaagatttaccatcagtatgcaggtatgttagatgcaatatttaatttttttagattaactattgcacaagcatagtga |
2022461 |
T |
|
| Q |
230 |
ttataggaacaaataagacatcatgattgtgacacgatccttaatattcctgagaattatagtcaaatattgaaaactttgatgtggtggctaagattgc |
329 |
Q |
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| T |
2022462 |
ttataggaacaaataagacatcatgattgtgacacgatccttaatattcctgagaattatagtcaaatattgaaaactttgatgtggtggccaagattgc |
2022561 |
T |
|
| Q |
330 |
gggtgattaggattagactattttgatatcatcttgaatttatttgactatatttacaaaattatccctaaattatgtcccgcgcttgagcgacttgtcc |
429 |
Q |
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| T |
2022562 |
gggtgattaggattagactattttgatattatcttgaatttatttgactatatttacaaaattatccctaaattatgtcccgcgcttgagcgacttgtcc |
2022661 |
T |
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| Q |
430 |
acttatcggtaacctatga |
448 |
Q |
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| T |
2022662 |
acttatcggtaacctatga |
2022680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 2032973 - 2033010
Alignment:
| Q |
58 |
gtttataatagtaattttgatctttatagttcaccagc |
95 |
Q |
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| T |
2032973 |
gtttataatagtaattttgatatttatagctcaccagc |
2033010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 28736679 - 28736621
Alignment:
| Q |
55 |
ttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggatac |
113 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| || |||||||||||| |
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| T |
28736679 |
ttggtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatac |
28736621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 28743305 - 28743247
Alignment:
| Q |
55 |
ttggtttataatagtaattttgatctttatagttcaccagctgctacttggagggatac |
113 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| || |||||||||||| |
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| T |
28743305 |
ttggtttataatagtaattttgatttgtatagttcaccagcgcttaattggagggatac |
28743247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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