View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0712_low_13 (Length: 419)

Name: NF0712_low_13
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0712_low_13
NF0712_low_13
[»] chr3 (14 HSPs)
chr3 (26-413)||(19603339-19603722)
chr3 (29-337)||(19581100-19581400)
chr3 (24-135)||(19593440-19593550)
chr3 (26-146)||(19538953-19539073)
chr3 (180-264)||(19538828-19538912)
chr3 (26-88)||(19563426-19563488)
chr3 (180-337)||(18479472-18479630)
chr3 (26-88)||(19549180-19549242)
chr3 (33-87)||(19617208-19617262)
chr3 (26-89)||(19557176-19557239)
chr3 (30-85)||(19609555-19609610)
chr3 (173-264)||(19563242-19563329)
chr3 (59-139)||(18479373-18479452)
chr3 (286-337)||(19538753-19538805)
[»] chr4 (1 HSPs)
chr4 (342-400)||(19068791-19068849)
[»] chr6 (2 HSPs)
chr6 (26-145)||(18025068-18025186)
chr6 (376-412)||(31028811-31028847)
[»] chr7 (2 HSPs)
chr7 (353-388)||(3896125-3896160)
chr7 (347-413)||(3205551-3205616)


Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 26 - 413
Target Start/End: Complemental strand, 19603722 - 19603339
Alignment:
Q  26 agaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtaccccacgacatgattttacctttgcttctttttaatta 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19603722 agaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtaccccacgacatgattttacctttgcttctttttaatta 19603623  T
Q  126 tcgtatttgtaaaattcattgnnnnnnnnnnnnnnnnnnnnnnaaagtttaatataatattaattgttattttgtcaataatgcccttatttatatgttg 225  Q
    |||||||||||||||||||||                      |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19603622 tcgtatttgtaaaattcattgtttttatttttttgtcgtttttaaagtttaatataatattaattattattttgtcaataatgcccttatttatatgttg 19603523  T
Q  226 caaatagtgatatagcatgagataatgaaaatgattctannnnnnnnnnnnnnattgtatcaaattaaactaattaaactttattggttgtcttgatatt 325  Q
    |||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||    
T  19603522 caaatagtgatatagcatgagataatgaaaatgattctatttttttttt----attgtatcaaattaaactaattaaactttattggttgtcttgatatt 19603427  T
Q  326 tgtaaaatgtcaccaacaccgaattacatggcagcctcctggagtaggccgatataaatgtaatattgaagcagcgttttcatctcac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19603426 tgtaaaatgtcaccaacaccgaattacatggcagcctcctggagtaggccgatataaatgtaatattgaagcagcgttttcttctcac 19603339  T

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Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 29 - 337
Target Start/End: Complemental strand, 19581400 - 19581100
Alignment:
Q  29 actctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtaccccacgacatgattttacctttgcttctttttaattatcg 128  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||    
T  19581400 actctattattttttgttctcgcaatatgcatagcaaacttcaacttcattatatagta-ctcatgatatgattttacctttgcttctttttaattatcg 19581302  T
Q  129 tatttgtaaaattcattgnnnnnnnnnnnnnnnnnnnnnnaaagtttaatataatattaattgttattttgtcaataatgcccttatttatatgttgcaa 228  Q
    ||||||||||| |||||                        ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  19581301 tatttgtaaaaatcattctttttatttgtttgtcgtttttcaagtttaatataatattaattattattttg-caataatgcccttatttatatgttgcaa 19581203  T
Q  229 atagtgatatagcatgagataatgaaaatgattctannnnnnnnnnnnnnattgtatcaaattaaactaattaaactttattggttgtcttgatatttgt 328  Q
    | ||||||||||||||||||||||||||||||||||              ||||||||||||||||||     |||||||||||||||||||||||||||    
T  19581202 agagtgatatagcatgagataatgaaaatgattcta-tatttatttttttattgtatcaaattaaact-----aactttattggttgtcttgatatttgt 19581109  T
Q  329 aaaatgtca 337  Q
    |||||||||    
T  19581108 aaaatgtca 19581100  T

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Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 19593550 - 19593440
Alignment:
Q  24 caagaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtaccccacgacatgattttacctttgcttctttttaat 123  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | || || |||||||||||||||||||||||||||    
T  19593550 caagaactctattattgtttgttctcgcaatatgtatagcaaacttcaacttcattatatagta-ctcatgatatgattttacctttgcttctttttaat 19593452  T
Q  124 tatcgtatttgt 135  Q
    |||| |||||||    
T  19593451 tatcttatttgt 19593440  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 19539073 - 19538953
Alignment:
Q  26 agaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtaccccacgacatgattttacctttgcttctt-tttaatt 124  Q
    |||||||||||||  |||||||||| |||||| |||||||||||||| |||||||||||||| | || || |||||||||||||||  |||| ||| |||    
T  19539073 agaactctattatcttttgttctcgtaatatgaataacaaacttcaagttcattatatagta-ctcatgatatgattttacctttgtatcttattttatt 19538975  T
Q  125 atcgtatttgtaaaattcattg 146  Q
    || |||||| ||||||||||||    
T  19538974 attgtatttataaaattcattg 19538953  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 19538912 - 19538828
Alignment:
Q  180 taatattaattgttattttgtcaataatgcccttatttatatgttgcaaatagtgatatagcatgagataatgaaaatgattcta 264  Q
    ||||||||||  ||||||||||||| |||| ||||||||| ||||||||| ||||||||| | ||| ||||||||||||||||||    
T  19538912 taatattaatgattattttgtcaatgatgcgcttatttatgtgttgcaaagagtgatataacttgaaataatgaaaatgattcta 19538828  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 19563488 - 19563426
Alignment:
Q  26 agaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtac 88  Q
    |||||||||||||  |||||||||| |||||| |||||||||||||| |||||||||||||||    
T  19563488 agaactctattatcttttgttctcgtaatatgaataacaaacttcaagttcattatatagtac 19563426  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 337
Target Start/End: Original strand, 18479472 - 18479630
Alignment:
Q  180 taatattaattgttattttgtcaataatgcccttatttatatgttgcaaatagtgatatagcatgagataatgaaaatgattctannnnnnnnnnnnnna 279  Q
    ||||||||||  ||||||||||||| |||| ||||||||| | | ||||| ||||||||||| ||| ||||||||||||| ||||              |    
T  18479472 taatattaatgattattttgtcaatgatgcgcttatttatgtttagcaaagagtgatatagcttgaaataatgaaaatgaatcta-taaaaaagttttta 18479570  T
Q  280 ttg--tatcaaattaaactaattaaactttattggttgtcttgatatttgtaaaatgtca 337  Q
    |||  |||||||||||| |||| ||| ||||||| |||||||||||||||||||||||||    
T  18479571 ttgtatatcaaattaaagtaataaaattttattgcttgtcttgatatttgtaaaatgtca 18479630  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 19549242 - 19549180
Alignment:
Q  26 agaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtac 88  Q
    |||||||||||||  |||||||| | |||||| |||||||||||||| |||||||||||||||    
T  19549242 agaactctattatcttttgttcttgaaatatgaataacaaacttcaagttcattatatagtac 19549180  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 19617262 - 19617208
Alignment:
Q  33 tattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagta 87  Q
    |||||| ||||||| |||||||||||||| |||||||||| ||||||||||||||    
T  19617262 tattatcgtttgttttcgcaatatgcatagcaaacttcaagttcattatatagta 19617208  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 19557239 - 19557176
Alignment:
Q  26 agaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtacc 89  Q
    |||||||||||||  |||||||||| |||||| |||||||||||||| || |||||||| ||||    
T  19557239 agaactctattatcttttgttctcgtaatatgaataacaaacttcaagtttattatatactacc 19557176  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 19609610 - 19609555
Alignment:
Q  30 ctctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatag 85  Q
    ||||||||||||||||| |||||||||||| | ||||||| || ||||||||||||    
T  19609610 ctctattattgtttgttttcgcaatatgcacagcaaacttaaagttcattatatag 19609555  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 19563329 - 19563242
Alignment:
Q  173 tttaatataatattaattgttattttgtcaataatgcccttatttatatgttgcaaatagtgatatagcatgagataatgaaaatgattcta 264  Q
    |||||| ||||||||||  ||||||||||   ||||| ||||||||| ||||||||| |||||| |||| ||| |||||| |||||||||||    
T  19563329 tttaatgtaatattaatgattattttgtc---aatgcgcttatttatgtgttgcaaagagtgatgtagcttgaaataatg-aaatgattcta 19563242  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 18479373 - 18479452
Alignment:
Q  59 ataacaaacttcaacttcattatatagtaccccacgacatgattttacctttgcttctttttaattatcgtatttgtaaaa 139  Q
    |||||||| |||||  |||||||||||||| | | || |||||||||||||||  ||||||| |||||||||||| |||||    
T  18479373 ataacaaaattcaaactcattatatagtactc-atgatatgattttacctttgtatcttttttattatcgtatttataaaa 18479452  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 337
Target Start/End: Complemental strand, 19538805 - 19538753
Alignment:
Q  286 caaattaaactaattaaacttt-attggttgtcttgatatttgtaaaatgtca 337  Q
    ||||||||| |||| ||| ||| ||||||| ||||||||||||||||||||||    
T  19538805 caaattaaagtaataaaaattttattggttttcttgatatttgtaaaatgtca 19538753  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 400
Target Start/End: Original strand, 19068791 - 19068849
Alignment:
Q  342 caccgaattacatggcagcctcctggagtaggccgatataaatgtaatattgaagcagc 400  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  19068791 caccgcattacatggcagcttcctggagtaggccgatataaatgtaatattgatgcagc 19068849  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 18025186 - 18025068
Alignment:
Q  26 agaactctattattgtttgttctcgcaatatgcataacaaacttcaacttcattatatagtaccccacgacatgattttacctttgcttctttttaatta 125  Q
    |||||||||||||  ||||||||| ||||||| ||||||||||| || |||||||||||||||   | || ||||| || ||||||  ||||||| ||||    
T  18025186 agaactctattatcttttgttctcccaatatgaataacaaactttaaattcattatatagtactt-atgatatgatattgcctttgtatcttttttatta 18025088  T
Q  126 tcgtatttgtaaaattcatt 145  Q
    |||||||| ||||| |||||    
T  18025087 tcgtatttataaaaatcatt 18025068  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 412
Target Start/End: Original strand, 31028811 - 31028847
Alignment:
Q  376 gatataaatgtaatattgaagcagcgttttcatctca 412  Q
    |||||||||| |||||||| |||||||||||||||||    
T  31028811 gatataaatgcaatattgacgcagcgttttcatctca 31028847  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 388
Target Start/End: Original strand, 3896125 - 3896160
Alignment:
Q  353 atggcagcctcctggagtaggccgatataaatgtaa 388  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3896125 atggcagcctcctggagtaggccgatacaaatgtaa 3896160  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 413
Target Start/End: Complemental strand, 3205616 - 3205551
Alignment:
Q  347 aattacatggcagcctcctggagtaggccgatataaatgtaatattgaagcagcgttttcatctcac 413  Q
    |||||||||||||||| |||| |||||||| || |||||||||||||| ||||| || || ||||||    
T  3205616 aattacatggcagccttctgg-gtaggccgctagaaatgtaatattgacgcagctttctcttctcac 3205551  T

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