View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0712_low_16 (Length: 375)
Name: NF0712_low_16
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0712_low_16 |
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| [»] chr3 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 95 - 375
Target Start/End: Original strand, 42519009 - 42519289
Alignment:
| Q |
95 |
acatgcggccaacataaagcatccacactttttcagcgaatccattcatggcagctccggcgagaaaaagaacaccaccagagagcatggtaagacgtct |
194 |
Q |
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| T |
42519009 |
acatgcggccaacataaagcatccacactttttcagcgaatccattcatggcagctccggcgagaaaaagaacaccaccagagagcatggtaagacgtct |
42519108 |
T |
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| Q |
195 |
tccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacagagttagtgtctgactgtcgaatttg |
294 |
Q |
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| T |
42519109 |
tccaaagattctagttacagtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacagagttagtgtctgactgtcgaatttg |
42519208 |
T |
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| Q |
295 |
cagtattgattatctgcaggcttaatgtttagctgcttagcgtaaacatctggaaagaacttcattaagaatggatccatt |
375 |
Q |
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| T |
42519209 |
cagtattgattatctgcaggcttaatgtttagctgcttagcataaacatctggaaagaacttcattaagaatggatccatt |
42519289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 95 - 370
Target Start/End: Original strand, 1240788 - 1241063
Alignment:
| Q |
95 |
acatgcggccaacataaagcatccacactttttcagcgaatccattcatggcagctccggcgagaaaaagaacaccaccagagagcatggtaagacgtct |
194 |
Q |
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| T |
1240788 |
acatgcggccaacataaagcatccacactttttcagcgaatccattcatagcagctccagcgagaaaaagaacaccaccagagagcatggtaagatgtct |
1240887 |
T |
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| Q |
195 |
tccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacagagttagtgtctgactgtcgaatttg |
294 |
Q |
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| T |
1240888 |
tccaaagattctagttgcggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgttagtgtctgactgtcgaatttg |
1240987 |
T |
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| Q |
295 |
cagtattgattatctgcaggcttaatgtttagctgcttagcgtaaacatctggaaagaacttcattaagaatggat |
370 |
Q |
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| T |
1240988 |
cagtattgattatcggtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggat |
1241063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 136 - 268
Target Start/End: Complemental strand, 42551035 - 42550903
Alignment:
| Q |
136 |
ccattcatggcagctccggcgagaaaaagaacaccaccagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagcca |
235 |
Q |
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| T |
42551035 |
ccattcaaggcagcaccagcaagaaaaagcacacctccagaaatcatggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgcta |
42550936 |
T |
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| Q |
236 |
caagagcggccaaatacaaagaggatgtaaaca |
268 |
Q |
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| T |
42550935 |
caagagcagccaaatacaaagaggaggtaaaca |
42550903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 95 - 375
Target Start/End: Original strand, 41972421 - 41972700
Alignment:
| Q |
95 |
acatgcggccaacataaagcatccacactttttcagcgaatccattcatggcagctccggcgagaaaaagaacaccaccagagagcatggtaagacgtct |
194 |
Q |
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| T |
41972421 |
acatgcggccaacataaagcatccacactttttcagcgaatccattcatagcagctccagcgagaaaaagaacaccaccagagagcatggtaagacgtct |
41972520 |
T |
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| Q |
195 |
tccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacagagttagtgtctgactgtcgaatttg |
294 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
41972521 |
tccaaagattctagttacggtggatgctccaagagaatccacaagagcggccaaatacaaagaggatgtaaaca-acgtagtgtctgactgtcgaatttg |
41972619 |
T |
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| Q |
295 |
cagtattgattatctgcaggcttaatgtttagctgcttagcgtaaacatctggaaagaacttcattaagaatggatccatt |
375 |
Q |
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| T |
41972620 |
cagtattgattatccgtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatccatt |
41972700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 18235262 - 18235325
Alignment:
| Q |
136 |
ccattcatggcagctccggcgagaaaaagaacaccaccagagagcatggtaagacgtcttccaa |
199 |
Q |
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| T |
18235262 |
ccattcatggcagcaccagcaagaaaaagaacaccaccagaaagcatggtgatacgtcttccaa |
18235325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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