View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0712_low_21 (Length: 346)

Name: NF0712_low_21
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0712_low_21
NF0712_low_21
[»] chr1 (9 HSPs)
chr1 (167-317)||(4641404-4641554)
chr1 (8-142)||(4641667-4641801)
chr1 (8-74)||(4640537-4640603)
chr1 (26-104)||(31389087-31389165)
chr1 (26-104)||(31788219-31788297)
chr1 (26-104)||(14924701-14924779)
chr1 (26-92)||(29334241-29334307)
chr1 (16-61)||(38931331-38931376)
chr1 (22-70)||(27418186-27418234)
[»] chr6 (3 HSPs)
chr6 (23-90)||(34034192-34034259)
chr6 (23-86)||(34035005-34035068)
chr6 (15-61)||(24125988-24126034)
[»] chr4 (6 HSPs)
chr4 (23-86)||(22499122-22499185)
chr4 (23-90)||(22499931-22499998)
chr4 (21-102)||(53664234-53664315)
chr4 (26-61)||(34154821-34154856)
chr4 (15-61)||(47377584-47377630)
chr4 (15-47)||(34371478-34371510)
[»] chr8 (4 HSPs)
chr8 (21-102)||(33802318-33802399)
chr8 (21-104)||(33801521-33801604)
chr8 (26-104)||(43972029-43972107)
chr8 (26-70)||(40450963-40451007)
[»] chr2 (4 HSPs)
chr2 (23-104)||(38780007-38780088)
chr2 (26-104)||(4976448-4976526)
chr2 (26-104)||(4994355-4994433)
chr2 (8-70)||(36390966-36391028)
[»] chr7 (4 HSPs)
chr7 (8-47)||(29060739-29060778)
chr7 (8-47)||(42607090-42607129)
chr7 (8-53)||(24996677-24996722)
chr7 (8-53)||(44541702-44541747)
[»] chr3 (3 HSPs)
chr3 (15-70)||(45501271-45501326)
chr3 (8-47)||(49161808-49161847)
chr3 (16-66)||(51421656-51421706)
[»] scaffold0189 (1 HSPs)
scaffold0189 (26-104)||(12802-12880)
[»] chr5 (1 HSPs)
chr5 (8-53)||(6804900-6804945)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 167 - 317
Target Start/End: Complemental strand, 4641554 - 4641404
Alignment:
167 tgtctccctccccaacaaaccaagaagtttccttctagtttaaacatgtctatgccgatccacaacctctaatacttaccaagcaacaactttcagcttt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
4641554 tgtctccctccccaacaaaccaagaagtttccttctagtttaaacatgtctatgccgatccacaacctctgatacttaccaagcaacaactttcagattt 4641455  T
267 catttaattaatcacaaattcatagaaatcaaatattaaaaataacacaag 317  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
4641454 catttaattaatcacaaatccatagaaatcaaatattaaaaataacacaag 4641404  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 4641801 - 4641667
Alignment:
8 tagcataggaaagaggaattgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagataacatagttttatcatatacattcaacacctaa 107  Q
    |||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| | ||||||| |||||    
4641801 tagcatgggaaaggggaattgtttcccaccaagggaaagtaattttcaaccattggatcaaatagagaacatagttttatcatagaaattcaactcctaa 4641702  T
108 nnnnnnnctcacactcacccacatacaactgctgc 142  Q
           ||||||||||||||||||||||||||||    
4641701 ttttcttctcacactcacccacatacaactgctgc 4641667  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 4640537 - 4640603
Alignment:
8 tagcataggaaagaggaattgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagat 74  Q
    |||||| | |||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||    
4640537 tagcatggtaaaggggaattgtttcccaccatgggaaagtaattttcaaccattagatcaaatagat 4640603  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 31389087 - 31389165
Alignment:
26 ttgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagataacatagttttatcatatacattcaacacc 104  Q
    |||||||||| ||||||||||| ||||| ||| |||| || ||||||| ||||||||||||| ||  ||||||||||||    
31389087 ttgtttcccatcatgggaaagtcatttttaacgattggattaaatagagaacatagttttattatggacattcaacacc 31389165  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 31788297 - 31788219
Alignment:
26 ttgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagataacatagttttatcatatacattcaacacc 104  Q
    |||||||||||||||||||||| | ||| |||||||  || ||||||| |||||| ||||| |||| ||| ||||||||    
31788297 ttgtttcccaccatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacc 31788219  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 14924701 - 14924779
Alignment:
26 ttgtttcccaccatgggaaag-taattttcaaccattgaatcaaatagataacatagttttatcatatacattcaacacc 104  Q
    ||||||||||||||||||||| |||||||  ||| || ||| ||||||| |||||| |||||||||| ||| ||||||||    
14924701 ttgtttcccaccatgggaaagctaatttt-gaccgttaaattaaatagagaacatatttttatcatagacactcaacacc 14924779  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 29334241 - 29334307
Alignment:
26 ttgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagataacatagttttatcatat 92  Q
    |||||||||||||||||||||||| ||| | |||||  |||||||| | | |||| |||||||||||    
29334241 ttgtttcccaccatgggaaagtaaattttacccattagatcaaataaagaccatacttttatcatat 29334307  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 38931331 - 38931376
Alignment:
16 gaaagaggaattgtttcccaccatgggaaagtaattttcaaccatt 61  Q
    ||||| |||||||||||||||||||||||||| | ||| |||||||    
38931331 gaaaggggaattgtttcccaccatgggaaagtcaatttgaaccatt 38931376  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 27418186 - 27418234
Alignment:
22 ggaattgtttcccaccatgggaaagtaattttcaaccattgaatcaaat 70  Q
    |||||||||||||||||||  ||||||||||| |||||||  |||||||    
27418186 ggaattgtttcccaccatgaaaaagtaatttttaaccattagatcaaat 27418234  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 34034192 - 34034259
Alignment:
23 gaattgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagataacatagttttatcat 90  Q
    |||||| |||||||||||||||||| ||||| |||||||| |||||||||| ||||||||||||||||    
34034192 gaattgcttcccaccatgggaaagttattttaaaccattggatcaaatagagaacatagttttatcat 34034259  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 34035068 - 34035005
Alignment:
23 gaattgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagataacatagtttta 86  Q
    ||||||||||||| ||||||||||| ||||| |||||||| |||||||||| ||||||||||||    
34035068 gaattgtttcccatcatgggaaagttattttaaaccattggatcaaatagagaacatagtttta 34035005  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 24125988 - 24126034
Alignment:
15 ggaaagaggaattgtttcccaccatgggaaagtaattttcaaccatt 61  Q
    |||||| ||| |||||||||||||||||||||| ||||||| |||||    
24125988 ggaaaggggagttgtttcccaccatgggaaagttattttcagccatt 24126034  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 22499122 - 22499185
Alignment:
23 gaattgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagataacatagtttta 86  Q
    ||||||||| ||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||    
22499122 gaattgttttccatcatgggaaagttattttaaaccattggatcaaatagataacatagtttta 22499185  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 22499998 - 22499931
Alignment:
23 gaattgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagataacatagttttatcat 90  Q
    ||||||||| ||||||| ||||||| ||||| |||||||| |||||||||| ||||||||||||||||    
22499998 gaattgttttccaccataggaaagttattttaaaccattggatcaaatagagaacatagttttatcat 22499931  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 53664234 - 53664315
Alignment:
21 aggaattgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagataacatagttttatcatatacattcaaca 102  Q
    ||||||| ||||||||||||||||||||| | |  ||||||  || ||||||| ||||| ||||||||||| ||| ||||||    
53664234 aggaattctttcccaccatgggaaagtaaatattgaccattagataaaatagagaacatggttttatcatagacactcaaca 53664315  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 34154821 - 34154856
Alignment:
26 ttgtttcccaccatgggaaagtaattttcaaccatt 61  Q
    ||||||||||||||||||||||| ||||||||||||    
34154821 ttgtttcccaccatgggaaagtatttttcaaccatt 34154856  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 47377630 - 47377584
Alignment:
15 ggaaagaggaattgtttcccaccatgggaaagtaattttcaaccatt 61  Q
    |||||| ||| |||||||||||||||||||||| ||||||| |||||    
47377630 ggaaaggggagttgtttcccaccatgggaaagttattttcagccatt 47377584  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 34371478 - 34371510
Alignment:
15 ggaaagaggaattgtttcccaccatgggaaagt 47  Q
    |||||| ||||||||||||||||||||||||||    
34371478 ggaaaggggaattgtttcccaccatgggaaagt 34371510  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 33802399 - 33802318
Alignment:
21 aggaattgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagataacatagttttatcatatacattcaaca 102  Q
    ||||||| ||||||||||||||||||||| | |  |||||| ||| ||||||| ||||| ||||||||||| ||| ||||||    
33802399 aggaattctttcccaccatgggaaagtaaatattgaccattaaataaaatagagaacatggttttatcatagacactcaaca 33802318  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 33801521 - 33801604
Alignment:
21 aggaattgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagataacatagttttatcatatacattcaacacc 104  Q
    ||||||| ||||||||||||| ||||||| | |  |||||| ||| || |||| ||||| ||||||||||| ||| ||||||||    
33801521 aggaattctttcccaccatggaaaagtaaatattgaccattaaataaagtagagaacatggttttatcatagacactcaacacc 33801604  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 43972107 - 43972029
Alignment:
26 ttgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagataacatagttttatcatatacattcaacacc 104  Q
    ||||||||||| |||||||||| | ||| |||||||  || ||||||| |||||| ||||| |||| ||| ||||||||    
43972107 ttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacc 43972029  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 40451007 - 40450963
Alignment:
26 ttgtttcccaccatgggaaagtaattttcaaccattgaatcaaat 70  Q
    |||||||||||||||||||||||| ||| |||||||  |||||||    
40451007 ttgtttcccaccatgggaaagtaaattttaaccattagatcaaat 40450963  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 38780088 - 38780007
Alignment:
23 gaattgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagataacatagttttatcatatacattcaacacc 104  Q
    |||||| || ||| ||||||||||| ||||| ||  |||| |||||||||| ||||||||||||||||  ||||||| ||||    
38780088 gaattgctttccatcatgggaaagttattttaaattattggatcaaatagagaacatagttttatcatggacattcagcacc 38780007  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 4976526 - 4976448
Alignment:
26 ttgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagataacatagttttatcatatacattcaacacc 104  Q
    ||||||||||| |||||||||| | ||| |||||||  || ||||||| |||||| ||||| |||| ||| ||||||||    
4976526 ttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacc 4976448  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 4994433 - 4994355
Alignment:
26 ttgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagataacatagttttatcatatacattcaacacc 104  Q
    ||||||||||| |||||||||| | ||| |||||||  || ||||||| |||||| ||||| |||| ||| ||||||||    
4994433 ttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacc 4994355  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 36390966 - 36391028
Alignment:
8 tagcataggaaagaggaattgtttcccaccatgggaaagtaattttcaaccattgaatcaaat 70  Q
    |||||| |||||| | | |||||||||||||||||||||||| ||| |||||||  |||||||    
36390966 tagcatgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccattagatcaaat 36391028  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 29060778 - 29060739
Alignment:
8 tagcataggaaagaggaattgtttcccaccatgggaaagt 47  Q
    |||||| |||||| ||||||||||||||||||||||||||    
29060778 tagcatgggaaaggggaattgtttcccaccatgggaaagt 29060739  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 42607090 - 42607129
Alignment:
8 tagcataggaaagaggaattgtttcccaccatgggaaagt 47  Q
    |||||| |||||| ||||||||||||||||||||||||||    
42607090 tagcatgggaaaggggaattgtttcccaccatgggaaagt 42607129  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 24996722 - 24996677
Alignment:
8 tagcataggaaagaggaattgtttcccaccatgggaaagtaatttt 53  Q
    |||||| |||||| ||| ||||||||||||||||||||||| ||||    
24996722 tagcatgggaaaggggagttgtttcccaccatgggaaagtattttt 24996677  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 44541747 - 44541702
Alignment:
8 tagcataggaaagaggaattgtttcccaccatgggaaagtaatttt 53  Q
    |||||| |||||| |||||||||||| |||||||||||||| ||||    
44541747 tagcatgggaaagtggaattgtttccgaccatgggaaagtattttt 44541702  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 45501326 - 45501271
Alignment:
15 ggaaagaggaattgtttcccaccatgggaaagtaattttcaaccattgaatcaaat 70  Q
    |||||| ||| |||||| ||||||||||||||||| ||| |||||||| |||||||    
45501326 ggaaaggggagttgttttccaccatgggaaagtaaatttaaaccattggatcaaat 45501271  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 49161847 - 49161808
Alignment:
8 tagcataggaaagaggaattgtttcccaccatgggaaagt 47  Q
    |||||| |||||| ||||||||||||||||||||||||||    
49161847 tagcatgggaaaggggaattgtttcccaccatgggaaagt 49161808  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 51421706 - 51421656
Alignment:
16 gaaagaggaattgtttcccaccatgggaaagtaattttcaaccattgaatc 66  Q
    ||||| |||||||||||||||||||||||||| | ||| ||||||| ||||    
51421706 gaaaggggaattgtttcccaccatgggaaagtcaatttgaaccattaaatc 51421656  T

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Target: scaffold0189 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 12880 - 12802
Alignment:
26 ttgtttcccaccatgggaaagtaattttcaaccattgaatcaaatagataacatagttttatcatatacattcaacacc 104  Q
    |||||||||||||||||||||| | |||  ||||||  || || |||| |||||| |||||||||| ||| ||||||||    
12880 ttgtttcccaccatgggaaagttaattttgaccattagataaactagagaacatacttttatcatagacactcaacacc 12802  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 6804900 - 6804945
Alignment:
8 tagcataggaaagaggaattgtttcccaccatgggaaagtaatttt 53  Q
    |||||| |||||||||| |||||||||||||||| |||||| ||||    
6804900 tagcatgggaaagaggagttgtttcccaccatggaaaagtactttt 6804945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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