View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0712_low_23 (Length: 324)
Name: NF0712_low_23
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0712_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 29 - 316
Target Start/End: Original strand, 4211227 - 4211514
Alignment:
| Q |
29 |
aacatgtccctcttcttcgtagcttcctcctaggttgtctcttatatgtcccaaaacatcatcttcctcatgttcctcctctgtttccttaacttccacg |
128 |
Q |
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| T |
4211227 |
aacatgtccctcttcttcgtagcttcctcctaggttgtctcttatatgtcccaaaacatcatcttcctcatgttcctcctctgtttccttaacttccacg |
4211326 |
T |
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| Q |
129 |
tgttgtttatgagtttcatgagtgaaaacgttgttactgttgtcgggtgagagctttgtagtgaagggttgtgtaggtaagtaactataaaggttaatgg |
228 |
Q |
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| T |
4211327 |
tgttgtttatgagtttcatgagtgaaaacgttgttactgttgtcgggtgagagctttgtagtgaagggttgtgtaggtaagtaactataaaggttaatgg |
4211426 |
T |
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| Q |
229 |
atttgagtctttgtaaaacagaaggagatctagcaagttgaggaacatggatttcattttcgtacgtttgaagttgttgatattgttg |
316 |
Q |
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| T |
4211427 |
atttgagtctttgtaaaacagaaggagatctagcaagttgaggaacatggatttcattttcgtacgtttgaagttgttgatattgttg |
4211514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 4211552 - 4211596
Alignment:
| Q |
216 |
taaaggttaatggatttgagtctttgtaaaacagaaggagatcta |
260 |
Q |
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| T |
4211552 |
taaaagttgatggatttgagtctttgtaaaacagaaggagatcta |
4211596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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