View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0712_low_25 (Length: 309)
Name: NF0712_low_25
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0712_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 34 - 306
Target Start/End: Original strand, 6568256 - 6568530
Alignment:
| Q |
34 |
tatataaggatttgaggaaggtgtttggttgcttaaattgcttttttgtggattgacatgcatccataagagagtgtggctgaggtgaaaagatgagaat |
133 |
Q |
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| T |
6568256 |
tatataaggatttgaggaaggtgtttggttgcttaaattgcttttttgtggattgacatgcatccataagagagtgtggctgaggtgaaaagatgagaat |
6568355 |
T |
|
| Q |
134 |
gttccattagatatttgagtcggtttctactttgaacatacaattgtatgaaagtgatgtatgtattctatgcaagcaattagaacaaattaattaagac |
233 |
Q |
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| T |
6568356 |
gttccattagatatttgagtcggtttctactttgaacatacaattgtatgaaagtgatgtatgtattctatgcaagcaattagaacaaattaattaagac |
6568455 |
T |
|
| Q |
234 |
atgtccttggtacggctttcc--nnnnnnnttttaagaaacttgtgcattacatttcccctacctttgtttcttc |
306 |
Q |
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| T |
6568456 |
atgtccttggtacggctttccaatttttttttttaagaaacttgtgcattacatttcccctacttttgtttcttc |
6568530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 37
Target Start/End: Complemental strand, 44804202 - 44804171
Alignment:
| Q |
6 |
agtccattggtcatttattgaaaattcatata |
37 |
Q |
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| T |
44804202 |
agtccattggtcatttattgaaaattcatata |
44804171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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