View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0712_low_27 (Length: 256)
Name: NF0712_low_27
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0712_low_27 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 94 - 256
Target Start/End: Original strand, 17291005 - 17291169
Alignment:
| Q |
94 |
tagccgatcgtatcgacactctacactccattgctagattctatttcttccttagatcttctttcatttcttag-gtaccaagaaacaaaa-cacaatgt |
191 |
Q |
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| T |
17291005 |
tagccggttgtatcgacactctacgctccattgttagattatgtttcttccttagatcttctttcatttcttagtgtactaagaaaaaaaaacacaatgt |
17291104 |
T |
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| Q |
192 |
tccgatcctctagtgaagctgatcattgtgcacttgcatctgctgcctacgaaatacagtggttc |
256 |
Q |
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| T |
17291105 |
cccgatcctctagtgaagctgatcattgtgcacttgcatctgctgcctacgaaatacagtggttc |
17291169 |
T |
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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 17290384 - 17290445
Alignment:
| Q |
30 |
cttacatgccttaaacaggctattcaaaaatgtgtgaaaatcttacacttcttttactacag |
91 |
Q |
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| T |
17290384 |
cttaaatgccttaaatcggctattcgaaaatgtgtgaaaatcttacacttctcttattacag |
17290445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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