View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0712_low_3 (Length: 629)
Name: NF0712_low_3
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0712_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 85 - 600
Target Start/End: Original strand, 329776 - 330292
Alignment:
| Q |
85 |
cacagaaaagaaacatgaaacaattttcattgagctcaatgcttaaacacacttcaatcctattagtgcagagtaaagtcttcttagaagcaggcatcta |
184 |
Q |
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| T |
329776 |
cacagaaaagaaacatgaaacaattttcattgagctcaatgcttaaacacacttcaatcctattagtgcagagtaaagtcttcttagaagcaggcatcta |
329875 |
T |
|
| Q |
185 |
ataggcagcaacagcagagagcagcacaactgcaccaatatacaaacgcaaacaagttagtacgagtagtgaaaaatatacatacaattcgaagcagcaa |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
329876 |
ataggcagcaacagcagagagcagcacaactgcaccaatatacaaacgcaaacaagttagtacgagtggtgaaaaatatatatacaattcgaagcagcaa |
329975 |
T |
|
| Q |
285 |
acatacaatatcttcttcatgcatatgatctatttatctgtctatcatgacatgaacatgaag-nnnnnnnaccaatagattgcaagtctctgtattttg |
383 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
329976 |
acatacaatatcttcttcatgcatatgatctatttatctgtctatcatgacatgaacataaagttttttttaccaatagattgcaagtctctgtatttta |
330075 |
T |
|
| Q |
384 |
ctattttacataaaatattaagaattaccaacaatggaatgtgcaaaatttcaatttgataggagaaattgttctatttgtaactgtatgcatctataaa |
483 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
330076 |
ctattttacataaaatattaagaattaccagtaatggaatgtgcaaaatttcaatttgatgggagaaattgttctatttgtaactgtatgcatctataaa |
330175 |
T |
|
| Q |
484 |
cacatttcttttgatgagaatcataagtattggattttgtttgcttgtttagtatttgtttcaaatcttaagtatttaaaacacatgaagttagtgtgac |
583 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
330176 |
cacatttcttttgatgagaatcataagtattggattttgtttgcttgtttagtatttgtttcaaatcttaagtatttaaaacacatgaagttagtgtggc |
330275 |
T |
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| Q |
584 |
cttgattgcaacctaag |
600 |
Q |
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||||||||||||||||| |
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| T |
330276 |
cttgattgcaacctaag |
330292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 48030662 - 48030582
Alignment:
| Q |
150 |
gtgcagagtaaagtcttcttagaagcaggcatctaataggcagcaacagcagagagcagcacaactgcaccaatatacaaa |
230 |
Q |
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||||| ||||| ||||||| | ||||| ||||| || || |||||||||||||||||||| | ||||| |||| |||||| |
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| T |
48030662 |
gtgcaaagtaatgtcttctcaaaagcatgcatccaagagacagcaacagcagagagcagccaagctgcaacaatttacaaa |
48030582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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