View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0712_low_30 (Length: 217)
Name: NF0712_low_30
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0712_low_30 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 80 - 217
Target Start/End: Complemental strand, 6568112 - 6567975
Alignment:
| Q |
80 |
cagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatga |
179 |
Q |
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| T |
6568112 |
cagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatga |
6568013 |
T |
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| Q |
180 |
acttgatgagatgagtggagggagagacattgaacaag |
217 |
Q |
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| T |
6568012 |
acttgatgagatgagtggagggagagacattgaacaag |
6567975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 217
Target Start/End: Original strand, 49289816 - 49289953
Alignment:
| Q |
80 |
cagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatga |
179 |
Q |
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| T |
49289816 |
cagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatga |
49289915 |
T |
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| Q |
180 |
acttgatgagatgagtggagggagagacattgaacaag |
217 |
Q |
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| T |
49289916 |
acttgatgagataccaagagggagagagattgaacaag |
49289953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 217
Target Start/End: Original strand, 49296767 - 49296904
Alignment:
| Q |
80 |
cagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatga |
179 |
Q |
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| T |
49296767 |
cagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatga |
49296866 |
T |
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| Q |
180 |
acttgatgagatgagtggagggagagacattgaacaag |
217 |
Q |
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| T |
49296867 |
acttgatgagataccaagagggagagagattgaacaag |
49296904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 217
Target Start/End: Original strand, 49303497 - 49303634
Alignment:
| Q |
80 |
cagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatga |
179 |
Q |
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|||| ||| ||||||||||||||||||||||| ||||||||| |||| ||||| || || || || |||||||||| |||||||||| ||| |||| |
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| T |
49303497 |
cagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatga |
49303596 |
T |
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| Q |
180 |
acttgatgagatgagtggagggagagacattgaacaag |
217 |
Q |
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| T |
49303597 |
acttgatgagataccaagagggagagagattgaacaag |
49303634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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