View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0712_low_32 (Length: 207)
Name: NF0712_low_32
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0712_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 8437093 - 8436963
Alignment:
| Q |
1 |
cggaaacggtgtgaaatgatgagagtgagtgagctataaaactaacgtatgatattcattcaggtatacattgaatagctgatgagttgataggtaaatg |
100 |
Q |
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| T |
8437093 |
cggaaacgttgtgaaatgatgagagtgagtgagctataaaactaacgtatgatgttcattcaggtatacattgaatagctgttaagttgataggtaaatg |
8436994 |
T |
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| Q |
101 |
gccatcagctttgtacatgctatgttatatt |
131 |
Q |
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|||| ||||||||||||||||| ||||||| |
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| T |
8436993 |
tccataagctttgtacatgctatattatatt |
8436963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 8447579 - 8447511
Alignment:
| Q |
10 |
tgtgaaatgatgagagtgagtgagctataaaactaacgtatgatattcattcaggtatacattgaatag |
78 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||||| |
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| T |
8447579 |
tgtgaaatgatgagagtgagtgagctataaaaccaacatatgacattcattcaagtatacattgaatag |
8447511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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