View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0712_low_4 (Length: 595)
Name: NF0712_low_4
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0712_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 23 - 515
Target Start/End: Original strand, 506667 - 507143
Alignment:
| Q |
23 |
taggaatcttttctatttatgaaaccacattgatggctcaaaaatgcaacaaggttattccatctctttacat------gacaataatataagttccttt |
116 |
Q |
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| T |
506667 |
taggaatcttttctatttatgaaaccacattgatggctcaaaaatgcaacaaggttattccatctctttacatttacatgacaataatataagttccttt |
506766 |
T |
|
| Q |
117 |
aagatcacaatcattcataaactacatttggctaacttttagccactgtattattcctgacaaaaacttgtaaatgagaattgtatgagatgaaaaggag |
216 |
Q |
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| T |
506767 |
aaga---caatcattcataaactacatttggctaacttttagccactgtatt---cctgacaaaaaattgtaaatgaga-----------tgaaaaggag |
506849 |
T |
|
| Q |
217 |
caattcaagtgttcaccaagaacgctaaacaaattatatcgtaattaatgctaggatgtgggtacaccttgtgttgtgttcttggtgaacacacctaata |
316 |
Q |
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| T |
506850 |
caattcaagtgttcaccaagaacgctaaacaaattatatcgtaattaatgctaggatgtgggtacaccttgt-----gttcttggtgaacacacctaata |
506944 |
T |
|
| Q |
317 |
aggtacatattaggtgcaagagctgtgagagatcaacaggtatgctaaatgaaaggcttgaacttattgtttgttttggattttttcgctgataaaagaa |
416 |
Q |
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| T |
506945 |
aggtacatattaggtgcaagagctgtgagagatcaacaggtatgctaaatgaaaggcttgaacttattgtttgttttgaattttttcgctgataaaagaa |
507044 |
T |
|
| Q |
417 |
ttggttagagttnnnnnnncatgacacgtggaaacaaaccagacgaactggcaatcaattcttttgttttaattttattcaagtttctcatattcttcg |
515 |
Q |
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| T |
507045 |
ttggttagagttaaaaaaacatgacatgtggaaacaaaccagacgaactggcaatcaattcttttgttttaattgtattcaagtttctcattttcttcg |
507143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 23 - 291
Target Start/End: Original strand, 47734 - 48000
Alignment:
| Q |
23 |
taggaatcttttctatttatgaaaccacattgatggctcaaaaatgcaacaaggttattccatctctttacatgacaataatataagttcctttaagatc |
122 |
Q |
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| T |
47734 |
taggaatcttttctatttctgaaaccatagtgatggctcaaaaatgcaacaaggctattccatcgctttgcatgacaataatataagttcctttgag--- |
47830 |
T |
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| Q |
123 |
acaatcattcataaactacatttggctaac-----ttttagccactgtattattcctgacaaaaacttgtaaatgagaattgtatgagatgaaaaggagc |
217 |
Q |
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| T |
47831 |
acaatcgttcataaaccacatttggcttacttttattttagcctc---catattcctaac-aaaacttgtagatgaaaattgtacgagatgaatagtagt |
47926 |
T |
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| Q |
218 |
aattcaagtgttcaccaagaacgctaaacaaattatatcgtaattaatgctaggatgtgggtacaccttgtgtt |
291 |
Q |
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| T |
47927 |
acatcaggtgttcaacaagaacacttaacacattatatcgtaattcatgctaggacgtggcgacaccttgtgtt |
48000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 428
Target Start/End: Original strand, 48074 - 48200
Alignment:
| Q |
310 |
cctaataaggtacatattaggtgcaagagctgtgagagatcaacaggtatgctaaatgaaa-------ggcttgaacttattgtttgttttgga-ttttt |
401 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||| | |||||||| | ||||||||||||| |||||||||| ||||| |
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| T |
48074 |
cctaataaggtacatattaggtgcaagagctgtaagagatctgtgtgtattcaaaatgaaaaatgaaagacttgaacttattgcttgttttggatttttt |
48173 |
T |
|
| Q |
402 |
tcgctgataaaagaattggttagagtt |
428 |
Q |
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| T |
48174 |
ttgctgaaaagagaatgggttagagtt |
48200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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