View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0712_low_5 (Length: 539)
Name: NF0712_low_5
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0712_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 30 - 506
Target Start/End: Original strand, 2310777 - 2311253
Alignment:
| Q |
30 |
gatgataatgcttttgttggtggttttttagacacatcttgtataaataagaggatacaattggtacttgaactgaattttcaggtttgtcattattgag |
129 |
Q |
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| T |
2310777 |
gatgataatgcttttgttggtggttttttagacacatcttgtataaataagaggatacaattggtacttgaactgaattttcaggtttgtcattattgag |
2310876 |
T |
|
| Q |
130 |
agcagagaatagagaagtggactctgttgtagatgaaattcttggaggaaaaatattttaagaatttatgagcaatggctctgtttatgttgattattct |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2310877 |
agcagagaatagagaagtggactctgttgtagatgaaattcttggaggaaaaatattttaagaatttatgagcaatggctctgtttatgttaattattct |
2310976 |
T |
|
| Q |
230 |
tccttatagtcatagataggttcatcaatcatgatataacttttctgttgatgcatctatcaactttgtaacattctattaatggccctgactatctaac |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
2310977 |
tccttatagtcatagataggttcatcaatcatgatataacttttctgttgatgcatctatcaactttgtaacattctattaatggctctggctatctaac |
2311076 |
T |
|
| Q |
330 |
aatgatctgatatagcttttttctgtcctgcatctgctatgatctaatggtcccttctgtcattcaatgttgtctcattacatatatgcttatgcttgtt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2311077 |
aatgatctgatatagcttttttctgtcctgcatctgctatgatctaatggtcccttctgtcattcaatgttgtctcattacatatatgcttatgcttgtt |
2311176 |
T |
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| Q |
430 |
ctcaacccactttattcacaatttgcaggtttgaatttgaagctgattacatcgggcttcaactaatggcaacagct |
506 |
Q |
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| T |
2311177 |
ctcaacccactttattcacaatttgcatgtttgaatttgaagctgattacatcgggcttcaactaatggcagcagct |
2311253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 180 - 506
Target Start/End: Complemental strand, 2928337 - 2928017
Alignment:
| Q |
180 |
aaatattttaagaatttatgagcaatggctctgtttatgttgattattcttccttatagtcatagataggttcatcaatcat--gatataacttttctgt |
277 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| |||||||||| | ||| | ||| |||||| | |
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| T |
2928337 |
aaatattttaagaatttatgagcaatgactctgtttatgctacttattcttccttatag------ataggttcatga-tcagtggccttaagttttctat |
2928245 |
T |
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| Q |
278 |
tgatgcatctat--caactttgtaacattctattaatggccctgactatctaacaatgatctgatatagcttttttctgtcctgcatctgctatgatcta |
375 |
Q |
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| T |
2928244 |
tgatgcatctatatcacctttgtaacattctattac-------gactatctaacagtgatctggtatggcttttttctgtgctgcatctgctgtgttcta |
2928152 |
T |
|
| Q |
376 |
atggtcccttctgtcattcaatgttgtctcatt----acatatatgcttatgcttgttctcaacccactttattcacaatttgcaggtttgaatttgaag |
471 |
Q |
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| T |
2928151 |
atggtcctttctgtcattcaatgttgtcttctttgttacatatatgcttatgtttgttctcaacccaatttattcacaatttgcaggtttgaatttgaag |
2928052 |
T |
|
| Q |
472 |
ctgattacatcgggcttcaactaatggcaacagct |
506 |
Q |
| |
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||||||| |||||||||| |||||||||| ||||| |
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| T |
2928051 |
ctgattatatcgggcttctactaatggcagcagct |
2928017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 500
Target Start/End: Complemental strand, 10173789 - 10173734
Alignment:
| Q |
445 |
tcacaatttgcaggtttgaatttgaagctgattacatcgggcttcaactaatggca |
500 |
Q |
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||||||||| || || |||||||||||| |||||||| ||||||| |||||||||| |
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| T |
10173789 |
tcacaatttacaagtgtgaatttgaagcggattacattgggcttctactaatggca |
10173734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 422 - 500
Target Start/End: Complemental strand, 1238027 - 1237949
Alignment:
| Q |
422 |
tgcttgttctcaacccactttattcacaatttgcaggtttgaatttgaagctgattacatcgggcttcaactaatggca |
500 |
Q |
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| T |
1238027 |
tgcttgttctcaatccaatttattcacaatttgcaggtttgaatttgaagcggattacattgggcttctactaatggca |
1237949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 422 - 506
Target Start/End: Original strand, 1175414 - 1175498
Alignment:
| Q |
422 |
tgcttgttctcaacccactttattcacaatttgcaggtttgaatttgaagctgattacatcgggcttcaactaatggcaacagct |
506 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||| ||||| |
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| T |
1175414 |
tgcttgttctcaacaaaatttattcacaatttgcaggtttgaatatgaagctgattacattgggcttctactgatggcagcagct |
1175498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 411 - 506
Target Start/End: Complemental strand, 29088970 - 29088875
Alignment:
| Q |
411 |
atatatgcttatgcttgttctcaacccactttattcacaatttgcaggtttgaatttgaagctgattacatcgggcttcaactaatggcaacagct |
506 |
Q |
| |
|
|||||| || |||||| ||||||| ||| | |||||||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||| ||||| |
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| T |
29088970 |
atatatactcatgcttattctcaatccaatgtattcacaatttgcagttttgaatttgaagttgattacattgggcttctactaatggcatcagct |
29088875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 486
Target Start/End: Complemental strand, 43286855 - 43286784
Alignment:
| Q |
416 |
tgcttatgcttgttctcaacccactttatt-cacaatttgcaggtttgaatttgaagctgattacatcgggc |
486 |
Q |
| |
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|||| |||| ||||||||||||| |||||| || |||||| ||| |||||||||||||||||||||| |||| |
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| T |
43286855 |
tgctcatgcctgttctcaacccaatttatttcataatttgtaggattgaatttgaagctgattacattgggc |
43286784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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