View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0712_low_9 (Length: 469)
Name: NF0712_low_9
Description: NF0712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0712_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 6993569 - 6993849
Alignment:
| Q |
1 |
ctgttaactctactaacaaaaacaataccataacaacactcactattattccactcttcattttcatttccaactctaacaaacttcacttcacttcact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6993569 |
ctgttaactctactaacaaaaacaataccataacaacactcactgttattccactcttcattttcatttccaactctaacaaacttcacttcacttcact |
6993668 |
T |
|
| Q |
101 |
ctgctctttgcaatctcagcttcatctgcatgtaataatataacaaattcagcatatatcccnnnnnnnnnnnnnnnaattgttttaatataaaaaacgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6993669 |
ctgctctttgcaatctcagcttcatctgcatgtaataatataacaaattcagcatatatccc----agagagaaaaaaattgttttaatataaaaaacgt |
6993764 |
T |
|
| Q |
201 |
acctttaattatgacaagttgttaaacttcactctgactcggtctataagaaggaaccattaacgttgtaaactacaagaatgtc |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6993765 |
acctttaattatgacaagttgttaaacttcactctgactcggtctataagaaggaaccattaacgttgtaaactacaagaatgtc |
6993849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 6993881 - 6993925
Alignment:
| Q |
325 |
atatgagtagttgtcttcataaaacacaaccatcaaggtttaagg |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6993881 |
atatgagtagttgtcttcataaaacacaaccatcaaggtttaagg |
6993925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 454
Target Start/End: Original strand, 31952875 - 31952935
Alignment:
| Q |
394 |
gatagaatgtataaatgaatgagtcgcttttgtagaggatgaagagatgaagatgatgatg |
454 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31952875 |
gatagaatgtataaatgaatgagttgcttttgtagaggatgaagagatgaagatgatgatg |
31952935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 452
Target Start/End: Complemental strand, 6800452 - 6800400
Alignment:
| Q |
400 |
atgtataaatgaatgagtcgcttttgtagaggatgaagagatgaagatgatga |
452 |
Q |
| |
|
|||||||||||||| ||| | |||||||||||||||||||| |||||| |||| |
|
|
| T |
6800452 |
atgtataaatgaataagttggttttgtagaggatgaagagaggaagataatga |
6800400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1382 times since January 2019
Visitors: 4368