View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713-Insertion-1 (Length: 579)
Name: NF0713-Insertion-1
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713-Insertion-1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 191 - 579
Target Start/End: Original strand, 25871324 - 25871713
Alignment:
| Q |
191 |
aacaataagaaaagagaaaaatatt-gttacaaaaattgttatcaaatgattgtacaaattttattactcatcccaaaagcacatataagtacaaacatc |
289 |
Q |
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||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| | |
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| T |
25871324 |
aacaataagaaaagagaaaaatattagtcacaaaaattattatcaaatgattgtacaaattttattacttatcccaaaagcgcatacaagtacaaacacc |
25871423 |
T |
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| Q |
290 |
atttgaaggaatgaaaatgagacatttccgttccactaacttaaagaagagttttcatgagtattttcccacacattgtcattcctacgttctagattct |
389 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25871424 |
atttgaaggaatgaaaatgagacatttccgttccacgactttaaagaagagttttcatgagtattttcccacacattgtcattcctacgttctagattct |
25871523 |
T |
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| Q |
390 |
ccaaaggaggaatgcaaattaagatacttgctcattttgctctgatcaatggaacaacttcatcgaaaagatttagttgactgaatgactggtctagggt |
489 |
Q |
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| T |
25871524 |
ccaaaggaggaatgcaaattaagatacttgctcattttgctctgattaatggaacaacttcatcgaaaagatttagttgactgaatgactggtctagggt |
25871623 |
T |
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| Q |
490 |
aagaatatgtgttctcttcaaactaagttttactggtcgggccggtgtgactttcttcttgaaaacaatgctttcaaagcctttatgggc |
579 |
Q |
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| T |
25871624 |
aagaatatgtgttctcttcaaaataagttttactggtccggccggtgttactttcttcttgaaaacaatgcattcaaagcctttatgggc |
25871713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 25871144 - 25871260
Alignment:
| Q |
7 |
atataatcataatcaaagatcaatttatttataattcacaaataggagaaaaccattatgttttatcaagcacaaaacctttggtatcaagaaatgatat |
106 |
Q |
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| T |
25871144 |
atataatcataatcaaagatcaattt----ataattcacaaataggagaaaaccattatgttttagcaagcacaaaacctttggtatcaagaaatgatat |
25871239 |
T |
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| Q |
107 |
ttgaacgacctttttataata |
127 |
Q |
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| T |
25871240 |
ttgaacgacctttttataata |
25871260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 24881734 - 24881666
Alignment:
| Q |
194 |
aataagaaaagagaaaaata---ttgttacaaaaattgttatcaaatgattgtacaaattttattactc |
259 |
Q |
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| T |
24881734 |
aataagaagagagaaaaataagattgttacaaaaattgtcatcaaatgactgtataaatatcattactc |
24881666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 1692381 - 1692312
Alignment:
| Q |
192 |
acaataagaaaagagaaaaatattgttacaaaaattgttatcaaatgattgtacaaattttattactcat |
261 |
Q |
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| T |
1692381 |
acaataaaaagagagaaaaatattagcataaaagttgttatcaaatgattgtacgtatattattactcat |
1692312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 40723392 - 40723352
Alignment:
| Q |
221 |
aaaaattgttatcaaatgattgtacaaattttattactcat |
261 |
Q |
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| T |
40723392 |
aaaaattgtcatcaaatgattgtacaaatatcattactcat |
40723352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 52636381 - 52636425
Alignment:
| Q |
214 |
ttgttacaaaaattgttatcaaatgattgtacaaattttattact |
258 |
Q |
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| T |
52636381 |
ttgtcacaaaatttgttatcaaatgattgttcaaatattattact |
52636425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 30327153 - 30327097
Alignment:
| Q |
193 |
caataagaaaagagaaaaatattgttacaaaaattgttatcaaatgattgtacaaat |
249 |
Q |
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|||||| |||||| |||||| ||||||||||| |||| | |||||||||||||||| |
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| T |
30327153 |
caataaaaaaagaaaaaaatgttgttacaaaagttgtcactaaatgattgtacaaat |
30327097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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