View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0713-Insertion-10 (Length: 226)

Name: NF0713-Insertion-10
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0713-Insertion-10
NF0713-Insertion-10
[»] chr7 (3 HSPs)
chr7 (40-226)||(32164324-32164510)
chr7 (71-164)||(24219932-24220025)
chr7 (7-42)||(32164243-32164278)
[»] chr8 (1 HSPs)
chr8 (112-159)||(8016479-8016526)
[»] chr2 (1 HSPs)
chr2 (111-164)||(38020745-38020798)


Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 32164324 - 32164510
Alignment:
Q  40 ttcaatttttattccaaaacattccaggaggtttaaagacctttgattgaaattgtagatgaacctctgcagcttgccagataaccatttccatgacagt 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  32164324 ttcaatttttattccaaaacattccaggaggtttaaagacctttgattgaaagtgtagatgaaactctgcagcttgctagataaccatttccatgacagt 32164423  T
Q  140 aatttaatttcttcaaaccaagtcttcgtcaatccannnnnnnctttgaatgtttctcgttgcggaaacaagcacattttttaaaat 226  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||| |||||||||||||||||||||||||||||||    
T  32164424 aatttaatttcttcaaaccaagtcttcgtcaatccatttttttctttgaatgtttttcgttgcggaaacaagcacattttttaaaat 32164510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 24219932 - 24220025
Alignment:
Q  71 tttaaagacctttgattgaaattgtagatgaacctctgcagcttgccagataaccatttccatgacagtaatttaatttcttcaaaccaagtct 164  Q
    |||||||| | | |||||||| ||||| || ||| | | ||||||| || ||||||||||||||||||||| || |||||||||||||||||||    
T  24219932 tttaaagaacatagattgaaagtgtagttgcacccccgtagcttgctagttaaccatttccatgacagtaactttatttcttcaaaccaagtct 24220025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 32164243 - 32164278
Alignment:
Q  7 acaatgcacagaaccagctcccgctaagacaacttc 42  Q
    ||||||||||||||||||||||||||||||||||||    
T  32164243 acaatgcacagaaccagctcccgctaagacaacttc 32164278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 8016479 - 8016526
Alignment:
Q  112 cttgccagataaccatttccatgacagtaatttaatttcttcaaacca 159  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||    
T  8016479 cttgctagctaaccatttccatgacagtaatttaatttcttcaaacca 8016526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 38020745 - 38020798
Alignment:
Q  111 gcttgccagataaccatttccatgacagtaatttaatttcttcaaaccaagtct 164  Q
    |||||| ||||||| |||||||| ||||| |||| |||||||||||||||||||    
T  38020745 gcttgctagataactatttccataacagtcattttatttcttcaaaccaagtct 38020798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University