View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0713-Insertion-11 (Length: 130)
Name: NF0713-Insertion-11
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713-Insertion-11 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 119; Significance: 3e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 3e-61
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 38955737 - 38955615
Alignment:
| Q |
8 |
tggtaataacaatggagcaggagtatacaatcgaagggtctcgtagataacatttcttaggtaagttagtttcggaaggtctgattcatcaaccaaacga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38955737 |
tggtaataacaatggagcaggagtatacaatcgaagggtctcgtagataacatttcttaggtaagttagtttcggaaggtctgattcatcaaccaaacga |
38955638 |
T |
|
| Q |
108 |
tcttgtcctacatgtgtatccac |
130 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
38955637 |
tcttgtcctacatgagtatccac |
38955615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 38974969 - 38975073
Alignment:
| Q |
16 |
acaatggagcaggagtatacaatcgaagggtctcgtagataacatttcttaggtaagttagtttcggaaggtctgattcatcaaccaaacgatcttgtcc |
115 |
Q |
| |
|
|||||||||||||||| ||||| | ||| ||||| ||||| | |||| | ||||||| ||||| || ||||| |||||||| | |||||| ||||| || |
|
|
| T |
38974969 |
acaatggagcaggagtgtacaacctaagtgtctcatagatgatatttttaaggtaagggagttttggtaggtcagattcatccaacaaacggtcttgacc |
38975068 |
T |
|
| Q |
116 |
tacat |
120 |
Q |
| |
|
||||| |
|
|
| T |
38975069 |
tacat |
38975073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University