View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713-Insertion-3 (Length: 370)
Name: NF0713-Insertion-3
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713-Insertion-3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 370
Target Start/End: Complemental strand, 11849765 - 11849403
Alignment:
| Q |
8 |
ccatcgtccaattctcctttaaatacagtagcgaaaccgcctttccccaatatgnnnnnnncactaaaattgtttgtaacttttcttagaacttgaattg |
107 |
Q |
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| T |
11849765 |
ccatcgtccaattctcctttgtatacagtagcgaaaccacctttccccaatatgtttttttcactaaaattgtttgtaacttctcttagaacttgaattg |
11849666 |
T |
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| Q |
108 |
aaatcaccatattaccagcttccacatttcgaacactactcgatggactaaatccaccagttcctcctgcaacgccgacactggaacttccggctgctgc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11849665 |
aaatcaccatattaccagcttccacatttcgaacactactcgatggactaaatccaccagttcctcgtgcaacgccgacactggaacttccggctgctgc |
11849566 |
T |
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| Q |
208 |
aacacttattttcacgccatttccatcacctgaatgacgaggatgtaccactattgcatttggagtttgaactttaccatcacgcttattatgtcttcta |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
11849565 |
aacacttattttcacgccatttccatcacctgaatgacgaggatgtaccactattgcatttggagtttgaactttaccagcacacttattatgtcttcta |
11849466 |
T |
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| Q |
308 |
ccgcgcataacaaataccaaaacccctactacaccaagtaaacaaacaatccccatcacaatc |
370 |
Q |
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| T |
11849465 |
ccgcgcataacaaataccaaaacccctactacaccaagtaaacaaacaatccccatcacaatc |
11849403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 8 - 331
Target Start/End: Original strand, 11857364 - 11857687
Alignment:
| Q |
8 |
ccatcgtccaattctcctttaaatacagtagcgaaaccgcctttccccaatatgnnnnnnncactaaaattgtttgtaacttttcttagaacttgaattg |
107 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||| | ||||||||| |||||||| ||||| ||||||||||| |
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| T |
11857364 |
ccatcgtccaattctcctttgtatacagtagcgaaaccgcctctccccaatatgtttttttcgctaaaattgcctgtaacttctcttaaaacttgaattg |
11857463 |
T |
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| Q |
108 |
aaatcaccatattaccagcttccacatttcgaacactactcgatggactaaatccaccagttcctcctgcaacgccgacactggaacttccggctgctgc |
207 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||| ||| |||||||| | |||||| |
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| T |
11857464 |
aaatcaccatattaccagcttccacattttgaacactactcgattgactaaatccagcagttcctcctgaaacgccggcaccagaacttccagatgctgc |
11857563 |
T |
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| Q |
208 |
aacacttattttcacgccatttccatcacctgaatgacgaggatgtaccactattgcatttggagtttgaactttaccatcacgcttattatgtcttcta |
307 |
Q |
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||||||||||||||||||||||||||| || || ||||||||||||||||| || ||||| ||||||| || ||| ||||||||||||| ||||||||| |
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| T |
11857564 |
aacacttattttcacgccatttccatctccagagtgacgaggatgtaccacgatcgcattcggagtttcaattttgtcatcacgcttattttgtcttcta |
11857663 |
T |
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| Q |
308 |
ccgcgcataacaaataccaaaacc |
331 |
Q |
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|| |||||||||||||| |||| |
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| T |
11857664 |
tggcacataacaaataccacaacc |
11857687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 8 - 336
Target Start/End: Complemental strand, 11836394 - 11836066
Alignment:
| Q |
8 |
ccatcgtccaattctcctttaaatacagtagcgaaaccgcctttccccaatatgnnnnnnncactaaaattgtttgtaacttttcttagaacttgaattg |
107 |
Q |
| |
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||||||||||| |||||||| ||||||| || ||||||||||| ||||||||| |||||||||||| |||||||| ||| | |||||||||| |
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| T |
11836394 |
ccatcgtccaactctcctttgtatacagtggcaaaaccgccttttcccaatatgttcttttcactaaaattgtctgtaacttctctcaacacttgaattg |
11836295 |
T |
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| Q |
108 |
aaatcaccatattaccagcttccacatttcgaacactactcgatggactaaatccaccagttcctcctgcaacgccgacactggaacttccggctgctgc |
207 |
Q |
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||||||||||| ||||||||||||||||| |||||| || |||||||||||||||||||||||||||| ||| ||| ||| |||||| | |||||||| |
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| T |
11836294 |
aaatcaccatactaccagcttccacatttttaacactccttgatggactaaatccaccagttcctcctgtaacaccggcaccagaactttcagctgctgc |
11836195 |
T |
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| Q |
208 |
aacacttattttcacgccatttccatcacctgaatgacgaggatgtaccactattgcatttggagtttgaactttaccatcacgcttattatgtcttcta |
307 |
Q |
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||||||||||||||| |||||||| || || |||||| ||||||||| |||||| ||||| |||||||||| ||| |||||||||||||||||||||||| |
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| T |
11836194 |
aacacttattttcacaccatttccttctccagaatgatgaggatgtatcactatcgcattcggagtttgaattttgccatcacgcttattatgtcttcta |
11836095 |
T |
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| Q |
308 |
ccgcgcataacaaataccaaaacccctac |
336 |
Q |
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| T |
11836094 |
caatacataataaatacgaaaacccctac |
11836066 |
T |
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