View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713-Insertion-5 (Length: 339)
Name: NF0713-Insertion-5
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713-Insertion-5 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 6 - 339
Target Start/End: Complemental strand, 39120112 - 39119778
Alignment:
| Q |
6 |
cactcagcccaa-gtaagtatcgcccccagagtttaggcttgtcgtgcacaaaacatcgtaagtactgctgaagcgttttgttgatgatttctatctact |
104 |
Q |
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| T |
39120112 |
cactcagcccaatgtaagtatcgcccccagagtttaggcttgtcgtgcacaaaacatcgtaagtactgctgaagcgttttgttgatgatttctatctact |
39120013 |
T |
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| Q |
105 |
atcactttctagatgatacgcagtggacaggcgtaactttgtgccactaagacgaaacagttaacgcccaaaacgactgagaaaaatcgggtcacgggca |
204 |
Q |
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| T |
39120012 |
atcgctttctagatgatacgcagtggacaggcgtaactttgtgccactaagacgaaacagttaacgcccaaaatgactgagaaaaatcgggtcacgggca |
39119913 |
T |
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| Q |
205 |
gatacaagtctgcaactttgacagcagtgaaattggtcggcagcataccaaattgtgaagcctttgagagtcgatcgactaccactaatatcactgtttg |
304 |
Q |
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| T |
39119912 |
gatacaagtctgcaactttgacagcagtgaaattggtcggcagcataccaaattgtgaagcctttgagagtcgaccgaccaccactaatatcactgtgtt |
39119813 |
T |
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| Q |
305 |
attttgaaaagaagggagcccaccaccccaatcat |
339 |
Q |
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| T |
39119812 |
attttgaaaagaagggagcccaccaccccaatcat |
39119778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 38611469 - 38611664
Alignment:
| Q |
18 |
gtaagtatcgcccccagagtttaggcttgtcgtgcacaaaacatcgtaagtactgctgaagcgttttgttgatgatttctatcta-ctatcactttctag |
116 |
Q |
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| T |
38611469 |
gtaagtatcgcccccagagtttaggcttgtcgtgcagaaaacaccgtaggtactgctgaagcgttttgttgacgatttctatctatccatcactttgtgg |
38611568 |
T |
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| Q |
117 |
atgatacgcagtggacaggcgtaactttgtgccactaagacgaaacagttaacgcccaaaacgactgagaaaaatcgggtcacgggcagatacaag |
212 |
Q |
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| T |
38611569 |
atgatatgcaatggccaggcgtaactttgtgccactaagacgaaacagttaacgccaaaaacgactgagaaaaatcgggtcacggtcagatacaag |
38611664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 39117885 - 39117700
Alignment:
| Q |
22 |
gtatcgcccccagagtttaggcttgtcgtgcacaaaacatcgtaagtactgctgaagcgttttgttgatgatttctatcta-ctatcactttctagatga |
120 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| |||||||||||| | |||||||| | ||||| |
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| T |
39117885 |
gtattgcccccagagtttaggcttgtcgtgcacaaaacaccgtagctactgctgaaacgttttgttgacgatttctatctatccatcactttgtggatga |
39117786 |
T |
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| Q |
121 |
tacgcagtggacaggcgtaactttgtgccactaagacgaaacagttaacgcccaaaacgactgagaaaaatcgggtcacgggcagat |
207 |
Q |
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| T |
39117785 |
tacgcagtggacaagcgtaactttgtgccactaaaatgaaacagttcacgccaaaaacaactgag-aaaatcgggtcacggccagat |
39117700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 215 - 328
Target Start/End: Complemental strand, 39117645 - 39117534
Alignment:
| Q |
215 |
tgcaactttgacagcagtgaaattggtcggcagcataccaaattgtgaagcctttgagagtcgatcgactaccactaatatcactgtttgattttgaaaa |
314 |
Q |
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| T |
39117645 |
tgcaactttgacagcagtgaaattggtcggcagcataccaaagtgtgaagcctttgagagtcgaccgaccaccactaatatcactgtt--attttgaaaa |
39117548 |
T |
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| Q |
315 |
gaagggagcccacc |
328 |
Q |
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| T |
39117547 |
gaagggagcccacc |
39117534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 55 - 210
Target Start/End: Original strand, 38612464 - 38612619
Alignment:
| Q |
55 |
aaaacatcgtaagtactgctgaagcgttttgttgatgatttctatcta-ctatcactttctagatgatacgcagtggacaggcgtaactttgtgccacta |
153 |
Q |
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|||||| |||| |||||||||||| |||||||||| |||||||| ||| | |||||||| | |||||||| |||| |||| ||||||||||||||||||| |
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| T |
38612464 |
aaaacaccgtaggtactgctgaagtgttttgttgacgatttctacctatccatcactttgtggatgatacacagtagacaagcgtaactttgtgccacta |
38612563 |
T |
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| Q |
154 |
agacgaaacagttaacgcccaaaacgactgagaaaaatcgggtcacgggcagataca |
210 |
Q |
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| T |
38612564 |
agacgaaacagttcacgccaaaaacgactgag-aaaatcgggtcacggtaagataca |
38612619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 38612662 - 38612782
Alignment:
| Q |
208 |
acaagtctgcaactttgacagcagtgaaattggtcggcagcataccaaattgtgaagcctttgagagtcgatcgactaccactaatatcactgtttgatt |
307 |
Q |
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|||| ||||||||||||||| || |||||||| ||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||| || ||||| |
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| T |
38612662 |
acaactctgcaactttgacaacattgaaattgatcggcagtataccaaagtgtgaagcctttgagagtcgaccgaccaccactaatatcacagtgtgatt |
38612761 |
T |
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| Q |
308 |
ttgaaaagaagggagcccacc |
328 |
Q |
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| T |
38612762 |
ttgaaaagaagggagcccacc |
38612782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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