View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713-Insertion-7 (Length: 310)
Name: NF0713-Insertion-7
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713-Insertion-7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 40001402 - 40001704
Alignment:
| Q |
8 |
ttttcttgggcgaagaagagaatccattagagaattctgtaacagaattatatcttcgataatcaattttctctccataatcatcaactcttgaatgaga |
107 |
Q |
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| T |
40001402 |
ttttcttgggcgaagaagagaatacattagagaattctgtaacagaattatatcttcgataatcaattttctctccataatcatcaactcttgaatgaga |
40001501 |
T |
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| Q |
108 |
agcttgttctccatggtaggtgtagtacccttgatcgatttcatggtaaaaatcgttgttacgtagagcacatcctgatgaaagacatttatattttctg |
207 |
Q |
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| T |
40001502 |
agctggttctccatggtaggtgtagtacccttgatcgatttcatggtaaaaatcgttgttacgtagagcacatcctgatgaaagacatttatattttctg |
40001601 |
T |
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| Q |
208 |
cgactttttgtttttcttattactctgaagatcataggcagaagaccctccataatatgtatcacaattcacaaccttaattccttcctttttgttcttg |
307 |
Q |
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| T |
40001602 |
cgactttttgtttttcttattactctgaaaatcataggcagaagaccctccataatatgtatcacaattcacaaccttaattccttcctttttgttcttg |
40001701 |
T |
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| Q |
308 |
aag |
310 |
Q |
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| T |
40001702 |
aag |
40001704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 43103320 - 43103438
Alignment:
| Q |
23 |
aagagaatccattagagaattctgtaacagaattatatcttcgataatcaattttctctccataatcatcaactcttgaatgagaagcttgttctccatg |
122 |
Q |
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| T |
43103320 |
aagagaacccattagagaattccataacagaattatatcttcgataatcaattttgtctgcataatcatcaacccttgaattagaagattgttctccatg |
43103419 |
T |
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| Q |
123 |
gtaggtgtagtacccttga |
141 |
Q |
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| T |
43103420 |
gtagttgtagtgcccttga |
43103438 |
T |
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