View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0713_high_15 (Length: 254)
Name: NF0713_high_15
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_high_15 |
 | |
|
| [»] scaffold0177 (8 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] scaffold0320 (2 HSPs) |
| | |
|
| [»] scaffold1425 (4 HSPs) |
| | |
|
| [»] scaffold0585 (1 HSPs) |
| | |
|
| [»] scaffold0036 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0177 (Bit Score: 171; Significance: 6e-92; HSPs: 8)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 21914 - 21689
Alignment:
| Q |
28 |
tacttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaa |
127 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| | ||| ||||| ||||||||||||||| |
|
|
| T |
21914 |
tacttccctaaaataaagtttaaattaagttcgtctcgaaaggaggaacctttggtgaccaaaattta-tcctaccttctttggcttggattcttgccaa |
21816 |
T |
|
| Q |
128 |
attcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagtt |
227 |
Q |
| |
|
|| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21815 |
atgcctaatatagttcattctagttttgtaatactaattttatgatgattatggacctaattaagaagttacttccctaaaataaagtttaaattaagtt |
21716 |
T |
|
| Q |
228 |
cgtctccaaaggaggaacctttggtga |
254 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
21715 |
cgtctcccaaggaggaacctttggtga |
21689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 22083 - 21857
Alignment:
| Q |
28 |
tacttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaa |
127 |
Q |
| |
|
||||||| |||||||| ||||||||||||| |||||| |||||||||||||||||||| |||||||||| || ||||| ||| ||| ||||||||||| |
|
|
| T |
22083 |
tacttccttaaaataaaatttaaattaagtttgtctcccaaggaggaacctttggtgaccaaaatttaatatgaacttttatggcttgaattcttgccaa |
21984 |
T |
|
| Q |
128 |
attcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagtt |
227 |
Q |
| |
|
|| ||||||||| |||||||||| ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21983 |
atgcctaatataattcattctagtaatgtaatactacttttatgatgattatggaccaaattaagaagttacttccctaaaataaagtttaaattaagtt |
21884 |
T |
|
| Q |
228 |
cgtctccaaaggaggaacctttggtga |
254 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
21883 |
cgtctcgaaaggaggaacctttggtga |
21857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 37 - 213
Target Start/End: Complemental strand, 22986 - 22811
Alignment:
| Q |
37 |
aaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaat |
136 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||| ||| | ||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
22986 |
aaaattaagtttaaattaagttcgtctcccaagaaggaacctttggtgaccaaaattta-tcctaccttttttggcttggattcttgtcaaatgcctaat |
22888 |
T |
|
| Q |
137 |
atagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaa |
213 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22887 |
atagttcattctagttatgtaatactaattttatgatgattatggacataattaacaagttacttccctaaaataaa |
22811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 113 - 254
Target Start/End: Complemental strand, 22167 - 22026
Alignment:
| Q |
113 |
ttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataa |
212 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
22167 |
ttggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttatgatgattatgaacctaattaacaagttacttccttaaaataa |
22068 |
T |
|
| Q |
213 |
agtttaaattaagttcgtctccaaaggaggaacctttggtga |
254 |
Q |
| |
|
| ||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
22067 |
aatttaaattaagtttgtctcccaaggaggaacctttggtga |
22026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 21550 - 21442
Alignment:
| Q |
37 |
aaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaat |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||||||||||||||| |||||| |
|
|
| T |
21550 |
aaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacaaaaatttaatccgaactttttttgcttggattcttgccaaatacctaat |
21451 |
T |
|
| Q |
137 |
atagttcat |
145 |
Q |
| |
|
||||||||| |
|
|
| T |
21450 |
atagttcat |
21442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 21746 - 21630
Alignment:
| Q |
28 |
tacttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaa |
127 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| | ||| ||| ||||||||||| |
|
|
| T |
21746 |
tacttccctaaaataaagtttaaattaagttcgtctcccaaggaggaacctttggtgaccaaaatttaatccgaacttgtatggcttgaattcttgccaa |
21647 |
T |
|
| Q |
128 |
attcctaatatagttca |
144 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
21646 |
atgcctaatatagttca |
21630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 21552 - 21502
Alignment:
| Q |
204 |
ctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtga |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21552 |
ctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtga |
21502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 23012 - 22938
Alignment:
| Q |
180 |
ggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtga |
254 |
Q |
| |
|
||||||||||||||| ||| || || ||||| ||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
23012 |
ggacctaattaacaacttaatttccgaaaattaagtttaaattaagttcgtctcccaagaaggaacctttggtga |
22938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 30 - 254
Target Start/End: Original strand, 33866315 - 33866538
Alignment:
| Q |
30 |
cttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaat |
129 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||| |||| | |||||| || |||||||||||| |||| |
|
|
| T |
33866315 |
cttccctaaaataatttttaaattaagttcgtctccaaaggaggaacttctggtgaccaaaattttatcctaccttttt-ggcttggattcttgctaaat |
33866413 |
T |
|
| Q |
130 |
tcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcg |
229 |
Q |
| |
|
|| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
33866414 |
gtctgctatagttcattctatttatgtaatactcattgtatgatgattatggacctaattaacaagtttctttcctaaaataaagtttaaattaagttcg |
33866513 |
T |
|
| Q |
230 |
tctccaaaggaggaacctttggtga |
254 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
33866514 |
tctccaaaggaggaacctttggtga |
33866538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 37 - 254
Target Start/End: Original strand, 33866154 - 33866370
Alignment:
| Q |
37 |
aaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaat |
136 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| | |||||| | |||| ||||||||||||| | | | |
|
|
| T |
33866154 |
aaaataaagtacaaattaagttcgtctccaaaggaggaacctttggtgaccaaaattttatcctaactttttggctttg-attcttgccaaatgcttgct |
33866252 |
T |
|
| Q |
137 |
atagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaa |
236 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33866253 |
atagttcattctatttatgtaatactaattctatgatgattatggacctaaataacaagtttcttccctaaaataatttttaaattaagttcgtctccaa |
33866352 |
T |
|
| Q |
237 |
aggaggaacctttggtga |
254 |
Q |
| |
|
||||||||| | |||||| |
|
|
| T |
33866353 |
aggaggaacttctggtga |
33866370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 37 - 220
Target Start/End: Original strand, 33866490 - 33866672
Alignment:
| Q |
37 |
aaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaat |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | |||||| || || ||||||| |||||| || | |
|
|
| T |
33866490 |
aaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaaaattttatcctaccttttt-ggcttcgattctttccaaatgtctgct |
33866588 |
T |
|
| Q |
137 |
atagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaa |
220 |
Q |
| |
|
||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33866589 |
atagttcattctatttatgtaatactcattgtatgatgattatggacctaattaacaagtttcttccctaaaataaagtttaaa |
33866672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 113 - 254
Target Start/End: Original strand, 33866061 - 33866202
Alignment:
| Q |
113 |
ttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataa |
212 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||| ||||||||||| ||| | ||||||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
33866061 |
ttggattcttgtcaaatgtctgctatagttcattctatttatgtaatactcattgtttgatgattatggacccaattaacaagttttttctctaaaataa |
33866160 |
T |
|
| Q |
213 |
agtttaaattaagttcgtctccaaaggaggaacctttggtga |
254 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33866161 |
agtacaaattaagttcgtctccaaaggaggaacctttggtga |
33866202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 19284582 - 19284438
Alignment:
| Q |
28 |
tacttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaa |
127 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19284582 |
tacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaacatttaatccgatattttttggtttggattcttgccaa |
19284483 |
T |
|
| Q |
128 |
attcctaatatagttcattctagatatgtaatactaattttatga |
172 |
Q |
| |
|
||||| | ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
19284482 |
attccgattatagttcattctagttatgtaatactatttttatga |
19284438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 131 - 249
Target Start/End: Complemental strand, 27901729 - 27901611
Alignment:
| Q |
131 |
cctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgt |
230 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27901729 |
cctaatatagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacatccctaaaataaagtttaaattaagttcgt |
27901630 |
T |
|
| Q |
231 |
ctccaaaggaggaaccttt |
249 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
27901629 |
ctccaaaggaggaaccttt |
27901611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 27901659 - 27901531
Alignment:
| Q |
32 |
tccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattc |
131 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| || || |||||||| ||| | ||||||||| ||||||||||||||||||| |
|
|
| T |
27901659 |
tccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttcgtaaccaaaattta-tcctaccttttttggcttggattcttgccaaattc |
27901561 |
T |
|
| Q |
132 |
ctaatatagttcattctagatatgtaatac |
161 |
Q |
| |
|
||||||||||||||||||| |||||||||| |
|
|
| T |
27901560 |
ctaatatagttcattctagttatgtaatac |
27901531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 19284584 - 19284525
Alignment:
| Q |
195 |
gttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtga |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19284584 |
gttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtga |
19284525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 40589783 - 40589639
Alignment:
| Q |
28 |
tacttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaa |
127 |
Q |
| |
|
|||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40589783 |
tacttccctaatataaagtttaaattaagtacgtctccaaatgaggaacctttggtgaccaaaatttaatccgaacttttttggtttggattcttgccaa |
40589684 |
T |
|
| Q |
128 |
attcctaatatagttcattctagatatgtaatactaattttatga |
172 |
Q |
| |
|
|| |||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
40589683 |
atgcctaatatagttcattttagttatgtaatactaattttatga |
40589639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 40589849 - 40589726
Alignment:
| Q |
131 |
cctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgt |
230 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
40589849 |
cctaatatagttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaatataaagtttaaattaagtacgt |
40589750 |
T |
|
| Q |
231 |
ctccaaaggaggaacctttggtga |
254 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
40589749 |
ctccaaatgaggaacctttggtga |
40589726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 43181223 - 43181292
Alignment:
| Q |
141 |
ttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaat |
210 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
43181223 |
ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat |
43181292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 43181292 - 43181361
Alignment:
| Q |
141 |
ttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaat |
210 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
43181292 |
ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat |
43181361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 43181361 - 43181421
Alignment:
| Q |
141 |
ttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttactt |
201 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||| |||| |||||| ||||||||| |
|
|
| T |
43181361 |
ttcattctagttatataatactaattttatgatgattatagaccaaattaataagttactt |
43181421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 12 - 199
Alignment:
| Q |
28 |
tacttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgcc-- |
125 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12 |
tacttccctaaaataaggtttaaattaagttcgtctccaaagaaggaacctttggtgaccaaaatttaatccgaacttttttggtttggattcttgccaa |
111 |
T |
|
| Q |
126 |
-----------aaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttc |
202 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
112 |
atgcctaatataaatgcctaatatagatcattctagttatgtaatactaattttatgatgattatggacctatttaacaagttacttc |
199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 1 - 69
Alignment:
| Q |
186 |
aattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtga |
254 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1 |
aattaacaagttacttccctaaaataaggtttaaattaagttcgtctccaaagaaggaacctttggtga |
69 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1425 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: scaffold1425
Description:
Target: scaffold1425; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 12 - 134
Alignment:
| Q |
28 |
tacttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaa |
127 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
12 |
tacttccctaaaataaagtttaaattgagttcgtctccataggaggaacctttggtgaccaaaatttaatccgaacttttttggtttggattcttgccta |
111 |
T |
|
| Q |
128 |
attcctaatatagttcattctag |
150 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
112 |
atgcctaatatagttcattctag |
134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1425; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 1720 - 1832
Alignment:
| Q |
141 |
ttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaagga |
240 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1720 |
ttcattctagttatttaatactaatgttatgatgattatcgacctaattaaccagttacttccctaaaataaagtttaaattaagttcgtctccaaagga |
1819 |
T |
|
| Q |
241 |
ggaacctttggtg |
253 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1820 |
ggaacctttggtg |
1832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1425; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 1 - 69
Alignment:
| Q |
186 |
aattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtga |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
1 |
aattaacaagttacttccctaaaataaagtttaaattgagttcgtctccataggaggaacctttggtga |
69 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1425; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 1776 - 1832
Alignment:
| Q |
28 |
tacttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtg |
84 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1776 |
tacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtg |
1832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 2941185 - 2941043
Alignment:
| Q |
28 |
tacttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaa |
127 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| |||| | ||||||||| |||||||||| |||| |
|
|
| T |
2941185 |
tacttccctaaaataaagtttaaattaagttcgtttccaatggaggaacctttggtgaccaaaattt-atcctaccttttttggattggattcttaccaa |
2941087 |
T |
|
| Q |
128 |
attcctaatatagttcattctagatatgtaatactaattttatg |
171 |
Q |
| |
|
|| |||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
2941086 |
atgcctaatatagttcattctggttatgtaatactaattttatg |
2941043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 2941198 - 2941128
Alignment:
| Q |
184 |
ctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtga |
254 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
2941198 |
ctaattaagaagttacttccctaaaataaagtttaaattaagttcgtttccaatggaggaacctttggtga |
2941128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 24632719 - 24632608
Alignment:
| Q |
126 |
aaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaag-tttaaattaa |
224 |
Q |
| |
|
|||| |||| ||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
24632719 |
aaatgcctactatagttcattatattgatgtaatactcattttatgatgattatggacctaattaacaagttacttccctaaaataaagttttaaattga |
24632620 |
T |
|
| Q |
225 |
gttcgtctccaa |
236 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24632619 |
gttcgtctccaa |
24632608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 24632179 - 24632115
Alignment:
| Q |
153 |
atgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt |
217 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24632179 |
atgtaatacttattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt |
24632115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 22651439 - 22651373
Alignment:
| Q |
184 |
ctaattaacaagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttg |
250 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
22651439 |
ctaattaacaagttactttcctaaaataaagtttaaactaagttcgtctgcaaaggaggaatctttg |
22651373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 22651426 - 22651306
Alignment:
| Q |
28 |
tacttccccaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaa |
127 |
Q |
| |
|
||||| || ||||||||||||||| ||||||||||| ||||||||||| ||||| || | ||| ||||| || | ||||||| | ||||||||||||||| |
|
|
| T |
22651426 |
tactttcctaaaataaagtttaaactaagttcgtctgcaaaggaggaatctttgttgtccaaactttaa-ccaaccttttttagcttggattcttgccaa |
22651328 |
T |
|
| Q |
128 |
attcctaatatagttcattcta |
149 |
Q |
| |
|
| |||| | |||||||||||| |
|
|
| T |
22651327 |
gtgcctactctagttcattcta |
22651306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 24632345 - 24632276
Alignment:
| Q |
168 |
tatgatgattatggacctaattaacaagttacttccctaaaataaagt-ttaaattaagttcgtctccaa |
236 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||||||||||||||| |||| |||||| ||||||||||||| |
|
|
| T |
24632345 |
tatgatcattatggacttaattaacatgttacttccctaaaattaagtactaaattgagttcgtctccaa |
24632276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 237
Target Start/End: Complemental strand, 24632087 - 24631911
Alignment:
| Q |
66 |
aaaggaggaacctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaat |
165 |
Q |
| |
|
||||||| ||| |||| |||| ||||||| ||| | ||||||||| |||||| |||| |||| || |||||||||||||| |||||||| | | |
|
|
| T |
24632087 |
aaaggagtaacatttgttgactaaaattttatcttaccttttttggcttggatacttggaaaatgtttattatagttcattctactgatgtaataatcgt |
24631988 |
T |
|
| Q |
166 |
tttatgatga----ttatggacctaattaacaagttacttccctaaaataaag-tttaaattaagttcgtctccaaa |
237 |
Q |
| |
|
||||| |||| || ||||| ||||||| ||||||||||||| |||||||| |||||||| ||||| |||||||| |
|
|
| T |
24631987 |
tttataatgaatgattctggacataattaagaagttacttcccttaaataaagttttaaattgagttcttctccaaa |
24631911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0585 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0585
Description:
Target: scaffold0585; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 1681 - 1590
Alignment:
| Q |
77 |
ctttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaatttt |
168 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||||||| |||||||||| ||| |||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
1681 |
ctttggtgaccaaaatttaatccaaacttttttggtttagattcttgcctaatgcctaatatagttcattctagttatttaatactaatttt |
1590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 33036756 - 33036821
Alignment:
| Q |
152 |
tatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt |
217 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33036756 |
tatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt |
33036821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 33036848 - 33036913
Alignment:
| Q |
152 |
tatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt |
217 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33036848 |
tatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt |
33036913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 93246 - 93305
Alignment:
| Q |
79 |
ttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatat |
138 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
93246 |
ttggtgaccaaaatttaatccaaacttttttggtttggattcttgtcaaattcctaatat |
93305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 93305 - 93364
Alignment:
| Q |
79 |
ttggtgacgaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatat |
138 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
93305 |
ttggtgaccaaaatttaatccaaacttttttggtttggattcttgtcaaattcctaatat |
93364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 93364 - 93408
Alignment:
| Q |
79 |
ttggtgacgaaaatttaatccgatcttttttggtttggattcttg |
123 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||||||||||||| |
|
|
| T |
93364 |
ttggtgaccaaaatttaatccaaacttttttggtttggattcttg |
93408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 93213 - 93246
Alignment:
| Q |
105 |
tttttggtttggattcttgccaaattcctaatat |
138 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
93213 |
tttttggtttggattcttgtcaaattcctaatat |
93246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 15983840 - 15983887
Alignment:
| Q |
133 |
taatatagttcattctagatatgtaatactaattttatgatgattatg |
180 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15983840 |
taatattgttcattctagttatgtaatactaattttatgatgattatg |
15983887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 15983907 - 15983954
Alignment:
| Q |
133 |
taatatagttcattctagatatgtaatactaattttatgatgattatg |
180 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15983907 |
taatattgttcattctagttatgtaatactaattttatgatgattatg |
15983954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 15983974 - 15984021
Alignment:
| Q |
133 |
taatatagttcattctagatatgtaatactaattttatgatgattatg |
180 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15983974 |
taatattgttcattctagttatgtaatactaattttatgatgattatg |
15984021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University