View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713_high_27 (Length: 233)
Name: NF0713_high_27
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 38920890 - 38921127
Alignment:
| Q |
1 |
catctggatgcttgtttaagtagattatagagatagacagacaatgacattaagctaagctggtggtacccatagaaactaagcttttaatgcatgtttc |
100 |
Q |
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| T |
38920890 |
catctggatgcttgtttaagtagattatagagatagacagacaatgacattaagctaagctggtggtacccatagaaactaagattttaatgcatgtttc |
38920989 |
T |
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| Q |
101 |
agtatgtaaaaaattgtggatttttaagtgcactattggtaaaccaatattagatatccgtt------------------agtaatgaggctttaatgaa |
182 |
Q |
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| T |
38920990 |
agtatgtaaaaaattgtggatttttaagtgcactattggtaaaccaatattagatatccgtttatcgctaagcactggtgagtaatgaggctttaatgaa |
38921089 |
T |
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| Q |
183 |
catgtttttatatggaaactccttttgatgatgatgtc |
220 |
Q |
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| T |
38921090 |
catgtttttatatggaaactccttttgttgaagatgtc |
38921127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 10544765 - 10544869
Alignment:
| Q |
1 |
catctggatgcttgtttaagtagattatagagatagacagacaatgacattaagctaagctggtggtacccatagaaactaagcttttaatgcatgtttc |
100 |
Q |
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||||||||||| ||||| ||||| |||||||||||||||| || || |||||||||||||||||||||||||||| |||||| ||||||||| ||||| |
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| T |
10544765 |
catctggatgcatgttttagtaggttatagagatagacaggcagtggcattaagctaagctggtggtacccataggaactaaaattttaatgcttgtttg |
10544864 |
T |
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| Q |
101 |
agtat |
105 |
Q |
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||||| |
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| T |
10544865 |
agtat |
10544869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 10545135 - 10545188
Alignment:
| Q |
167 |
atgaggctttaatgaacatgtttttatatggaaactccttttgatgatgatgtc |
220 |
Q |
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||||||||||| | ||||| ||||||||||||||||||||||| ||| |||||| |
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| T |
10545135 |
atgaggctttactaaacatatttttatatggaaactccttttgttgaagatgtc |
10545188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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