View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0713_high_8 (Length: 326)

Name: NF0713_high_8
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0713_high_8
NF0713_high_8
[»] chr6 (1 HSPs)
chr6 (1-282)||(24104493-24104774)


Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 24104493 - 24104774
Alignment:
1 tactaaattttttaactagagttaagtcactcgaccaggctaaacgcgtggtcgaggtaatgtctgaacttggtgtgccgttagatttaacggcacacaa 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
24104493 tactaagttttttaactagagttaagtcactcgaccaggctaaacgcgtggtcgaggtaatgtctgaacttggtgtgccgttagacttaacggcacacaa 24104592  T
101 ttattttcttatgacttattgttatgttggtgatgtggaagcggcggttagggttttgaggacgatgggggaggagggtttttgttttgattcgcgaact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
24104593 ttattttcttatgacttattgttatgttggtgatgtggaagcggcggttacggttttgaggacgatggaggaggagggtttttgttttgattcgcgaact 24104692  T
201 tatgacgcgcttgtgttaggcgcgtgtaggaagaggaatgtggttggagctatggtgttggtgaggaggatggtggatgatg 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24104693 tatgacgcgcttgtgttaggcgcgtgtaggaagaggaatgtggttggagctatggtgttggtgaggaggatggtggatgatg 24104774  T

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