View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0713_low_11 (Length: 480)
Name: NF0713_low_11
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_11 |
 | |
|
| [»] scaffold0214 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 14291886 - 14291481
Alignment:
| Q |
1 |
aaagtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14291886 |
aaagtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcca |
14291787 |
T |
|
| Q |
101 |
aagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14291786 |
aagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattgaaggaaggtccag |
14291687 |
T |
|
| Q |
201 |
cttacattatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaa |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14291686 |
cttacattatcaaaggctttctcaaagtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaa |
14291587 |
T |
|
| Q |
301 |
catcattatcagaagtacctctacctggcaggaaactgctctggtaggggccaatgatagtatctaggataggcctgaggcgaaggacaagaactttggt |
400 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14291586 |
cagcattatcagaagtacctctacctggcaggaaactgctctggtaggggccaatgatagtatctaggataggcctgaggcgaaggacaagaactttggt |
14291487 |
T |
|
| Q |
401 |
gatgat |
406 |
Q |
| |
|
|||||| |
|
|
| T |
14291486 |
gatgat |
14291481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 14307935 - 14307530
Alignment:
| Q |
1 |
aaagtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcca |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14307935 |
aaagtttttccatacaaatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcca |
14307836 |
T |
|
| Q |
101 |
aagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14307835 |
aagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattgaaggaaggtccag |
14307736 |
T |
|
| Q |
201 |
cttacattatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14307735 |
cttacattatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgtaaaacaa |
14307636 |
T |
|
| Q |
301 |
catcattatcagaagtacctctacctggcaggaaactgctctggtaggggccaatgatagtatctaggataggcctgaggcgaaggacaagaactttggt |
400 |
Q |
| |
|
|| ||||||||||||||| ||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14307635 |
cagcattatcagaagtacatctacttggcagaaaactgctcaggtaggggccaatgatagtatctaggataggcctgaggcgaaggacaagaactttggt |
14307536 |
T |
|
| Q |
401 |
gatgat |
406 |
Q |
| |
|
|||||| |
|
|
| T |
14307535 |
gatgat |
14307530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 88 - 339
Target Start/End: Original strand, 24133325 - 24133576
Alignment:
| Q |
88 |
tgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgatta |
187 |
Q |
| |
|
||||||| ||||||||||||||||| | || || || ||||||||||||||||||||||| || || ||||| |||||||| || |||||||| |||| |
|
|
| T |
24133325 |
tgttcccgttccaaagaatagagagcgaagatgatgtaacacaatgcatgataagcttaatggtgatgtctgggaagccaaagtcgtgaaggcaagattt |
24133424 |
T |
|
| Q |
188 |
aaggaaggtccagcttacattatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatt |
287 |
Q |
| |
|
|||||| | |||| | ||||||||||| ||||| ||||| ||||| || || | | |||||||||| |||||||| ||||| ||||| ||| |
|
|
| T |
24133425 |
aaggaaagcccagttaacattatcaaacgctttttcaagatcaagtttgaaagtagcaaaatcctttttcttttttgatcttctcatgaaatgaattatt |
24133524 |
T |
|
| Q |
288 |
tcctgcaaaacaacatcattatcagaagtacctctacctggcaggaaactgc |
339 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24133525 |
tcctgcaaaacaacaacattatcagaagtacctctacctggcaggaagctgc |
24133576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 40 - 352
Target Start/End: Complemental strand, 33804091 - 33803779
Alignment:
| Q |
40 |
gaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgat |
139 |
Q |
| |
|
||||||| || |||||||| | || |||||||| |||||| |||| ||||| |||||||| || |||||| || || |||| |||||||||||||| |
|
|
| T |
33804091 |
gaggatcaccctgtctgagactgtgtgaaggcttgaaaggaggcattttgtttccattccacagtatagagtatgtagatgaggaaacacaatgcatgat |
33803992 |
T |
|
| Q |
140 |
aagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctttctcaaggtcaagcttaaat |
239 |
Q |
| |
|
||||| || || || ||||| || |||||||| || | ||| | | ||| || ||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33803991 |
gagcttgatggtgatgtctgggaaaccaaaatcctgcaagcaaaaattaagaaaatcccaattaacattatcaaaggctttctcaaggtcaagcttaaac |
33803892 |
T |
|
| Q |
240 |
gccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatcattatcagaagtacctctacctggcaggaaactgc |
339 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||| | ||||| |||||||||||||||| |||||||||||| || ||||| ||||| || |||| |
|
|
| T |
33803891 |
gccacaaatccttttttcttcttagatcttctcatgtaatgaataatttcctgcaaaacaatggaattatcagaagttcccctaccaggcagaaagctgc |
33803792 |
T |
|
| Q |
340 |
tctggtaggggcc |
352 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
33803791 |
tttggtaagggcc |
33803779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 355
Target Start/End: Complemental strand, 3881589 - 3881513
Alignment:
| Q |
279 |
tgaatgatttcctgcaaaacaacatcattatcagaagtacctctacctggcaggaaactgctctggtaggggccaat |
355 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||| || ||||| ||||| |||||||| ||||| |||||||| |
|
|
| T |
3881589 |
tgaataatttcctgcaaaacaatagagttatcagaagttcccctaccaggcagaaaactgctttggtaagggccaat |
3881513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 3881865 - 3881729
Alignment:
| Q |
6 |
ttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaa |
105 |
Q |
| |
|
||||||||||| | ||||| |||||| | || | ||||| ||||||| ||||||||| | ||| || ||| | |||| ||||| |||||||| | | |
|
|
| T |
3881865 |
ttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccataaga |
3881766 |
T |
|
| Q |
106 |
tagagagagtggaagaggtgacacaatgcatgataag |
142 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
3881765 |
tagagaaggtggaggaggtgacacaatgcatgataag |
3881729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 15813211 - 15813263
Alignment:
| Q |
126 |
acacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaag |
178 |
Q |
| |
|
||||| |||||||||||||| || |||||||||| ||||||||||| ||||| |
|
|
| T |
15813211 |
acacagtgcatgataagcttgatggtaatatctgagaagccaaaatcatgaag |
15813263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 46913762 - 46913702
Alignment:
| Q |
333 |
aaactgctctggtaggggccaatgatagtatctaggataggcctgaggcgaaggacaagaa |
393 |
Q |
| |
|
||||| || |||||||||||||| ||| |||||| |||||| ||||||| |||||||||| |
|
|
| T |
46913762 |
aaactactttggtaggggccaataataatatctaagataggtatgaggcggaggacaagaa |
46913702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 6e-69; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 54 - 406
Target Start/End: Original strand, 12646029 - 12646381
Alignment:
| Q |
54 |
ctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaa |
153 |
Q |
| |
|
||||| ||||| || ||||| ||| || |||| |||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
12646029 |
ctgagaccatgagatggcttgaaaagaggcataatgttcccattccaaaggatagaaagagtggatgaagtgacacaatgcatgataagcttaattgtaa |
12646128 |
T |
|
| Q |
154 |
tatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctt |
253 |
Q |
| |
|
| |||| ||| |||||||||||||||||||| | |||||| ||| | ||||||||||| || || | |||||| |||||||| ||||| | ||||| |
|
|
| T |
12646129 |
tgtctgaaaaaccaaaatcttgaaggcatgactgaaggaaaagccaattgacattatcaaaagcctttttaaggtctagcttaaaggccacataaccctt |
12646228 |
T |
|
| Q |
254 |
tttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatcattatcagaagtacctctacctggcaggaaactgctctggtaggggcca |
353 |
Q |
| |
|
|| ||||||||||| ||||| || |||||||||||||||||||||||| |||| |||| || |||||||| |||| |||||||| ||||||||| || |
|
|
| T |
12646229 |
ctttttctttgatcttctcatgtgatgaatgatttcctgcaaaacaacaacattgtcagtggtgcctctaccaggcaaaaaactgctttggtaggggtca |
12646328 |
T |
|
| Q |
354 |
atgatagtatctaggataggcctgaggcgaaggacaagaactttggtgatgat |
406 |
Q |
| |
|
|| |||||| | || || || ||||||||||||||||| |||||||| ||||| |
|
|
| T |
12646329 |
ataatagtaacaagaatcggtctgaggcgaaggacaaggactttggtaatgat |
12646381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 6 - 364
Target Start/End: Original strand, 27852955 - 27853313
Alignment:
| Q |
6 |
ttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaa |
105 |
Q |
| |
|
||||||||||| | |||||| | |||||| || ||| || |||||||| || ||||| |||||||| |||| | |||| ||||| || |||||||||| |
|
|
| T |
27852955 |
ttttccatacaaaggatgaataagtaaggagataaagggtccccttgtcttagaccatgagaaggcttgaaagaaggcattttgtttccgttccaaagaa |
27853054 |
T |
|
| Q |
106 |
tagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttac |
205 |
Q |
| |
|
|||||||| | || ||||| ||||||||||| || | ||| ||||||| || || |||||||| ||||||||||| |||| ||| || |||| | || |
|
|
| T |
27853055 |
tagagagaattgaggaggtaacacaatgcataatgaacttggttgtaatgtcagggaagccaaagtcttgaaggcaggatttaagaaaatcccagttaac |
27853154 |
T |
|
| Q |
206 |
attatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatca |
305 |
Q |
| |
|
||||||||| | || ||||| |||||||| || ||| | |||||||||||||| ||||| |||||| |||| |||||| | |||||||| || |
|
|
| T |
27853155 |
attatcaaactccttttcaagatcaagcttgaaggccgcaaaaccctttttcttcttcgatcttctcataaaatgaacaatttccggaaaaacaaccgca |
27853254 |
T |
|
| Q |
306 |
ttatcagaagtacctctacctggcaggaaactgctctggtaggggccaatgatagtatc |
364 |
Q |
| |
|
|||||| |||| |||||||| || ||||||||| | |||||||||||||| |||||||| |
|
|
| T |
27853255 |
ttatcaaaagtgcctctaccaggtaggaaactgttttggtaggggccaataatagtatc |
27853313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 397
Target Start/End: Original strand, 24893854 - 24894230
Alignment:
| Q |
21 |
atgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaag |
120 |
Q |
| |
|
|||||||| ||||| ||| | || || ||||||||||| ||||| | ||||| ||||| |||| ||||| |||||||| | || |||| ||||| | |
|
|
| T |
24893854 |
atgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattccataatatggagaatgtggagg |
24893953 |
T |
|
| Q |
121 |
aggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggcttt |
220 |
Q |
| |
|
||||||||||||||||||| ||||| || || || |||||||| ||||| || |||||||| || | |||||| ||| || |||||||| || ||||| |
|
|
| T |
24893954 |
aggtgacacaatgcatgatgagcttgatggtgatgtctggaaaaccaaattcctgaaggcaagaattaaggaaatcccatctgacattatcgaaagcttt |
24894053 |
T |
|
| Q |
221 |
ctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatcattatcagaagtacct |
320 |
Q |
| |
|
||| | ||| ||||| || || || | || || ||| |||||||| ||||||| |||||| |||||||||||||||| ||||||||||| || |
|
|
| T |
24894054 |
ctccaagtctagcttgaaagcaacataacctttcttcctctttgatttcctcatgaagtgaataatttcctgcaaaacaattgagttatcagaagttccc |
24894153 |
T |
|
| Q |
321 |
ctacctggcaggaaactgctctggtaggggccaatgatagtatctaggataggcctgaggcgaaggacaagaacttt |
397 |
Q |
| |
|
||||| ||||| || ||||| ||| | |||||||| | | || |||||||| ||||| ||| | ||||||||||| |
|
|
| T |
24894154 |
ctaccaggcagaaagctgctttggcaagggccaataagattactgaggataggtctgagacgatgcacaagaacttt |
24894230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 24990681 - 24990882
Alignment:
| Q |
21 |
atgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaag |
120 |
Q |
| |
|
|||||||| ||||| ||| | || || ||||||||||| ||||||| ||||| ||||| |||| ||||| || ||||| | |||||| | |||||| | |
|
|
| T |
24990681 |
atgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggcattttgttaccgttccataaaatagaaaaagtggagg |
24990780 |
T |
|
| Q |
121 |
aggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggcttt |
220 |
Q |
| |
|
|||||||||| |||||||| || || || || || |||||||| |||||||| |||||| | || | |||||| ||| || ||||||||||| ||||| |
|
|
| T |
24990781 |
aggtgacacagtgcatgatgagtttgatggtgatgtctggaaaaccaaaatcgtgaaggtaagacttaaggaaatcccatctgacattatcaaacgcttt |
24990880 |
T |
|
| Q |
221 |
ct |
222 |
Q |
| |
|
|| |
|
|
| T |
24990881 |
ct |
24990882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 48 - 300
Target Start/End: Original strand, 32725506 - 32725758
Alignment:
| Q |
48 |
ccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaa |
147 |
Q |
| |
|
||||||||||| |||||||||||||||| | |||| || || || ||||| | |||||||| ||||| || ||||||||||||||||||||||| | |
|
|
| T |
32725506 |
ccttgtctgagatcatgggaaggcttaaaggagggcattttattaccgttccataaaatagagaatgtggatgatgtgacacaatgcatgataagcttga |
32725605 |
T |
|
| Q |
148 |
ttgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctttctcaaggtcaagcttaaatgccacctg |
247 |
Q |
| |
|
| || || || ||||| ||||| || | ||||| || | ||| || ||| || ||||||||||| |||||||| |||||||| || || || || | |
|
|
| T |
32725606 |
tggtgatgtccggaaatccaaactcaaggaggcaagaattaagaaaatcccatctgacattatcaaaagctttctccaggtcaagtttgaaagctacata |
32725705 |
T |
|
| Q |
248 |
cccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaa |
300 |
Q |
| |
|
||||| ||||| || ||||| |||||| ||||| ||||||| |||||||| |
|
|
| T |
32725706 |
tcccttcttctttttagatcttctcataaagtgaactatttcctacaaaacaa |
32725758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 40 - 376
Target Start/End: Original strand, 53608334 - 53608670
Alignment:
| Q |
40 |
gaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgat |
139 |
Q |
| |
|
||||||| || |||||||| ||||| |||||| | |||| | |||| ||||| ||||||||||||||||||| || || |||| |||||||||||||| |
|
|
| T |
53608334 |
gaggatcaccctgtctgagaccatgtgaaggcctgaaagaaggcattttgtttccattccaaagaatagagaaggtagaggaggaaacacaatgcatgat |
53608433 |
T |
|
| Q |
140 |
aagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctttctcaaggtcaagcttaaat |
239 |
Q |
| |
|
||||| || || || ||||| || |||||||| || ||||| | | ||| || ||| | ||||||||||| ||||||||||| || ||||| || |
|
|
| T |
53608434 |
gagcttgatggtgatgtctgggaaaccaaaatcctgtaggcaaaaattaagaaaatcccaattgacattatcaaaagctttctcaagatcgagcttgaaa |
53608533 |
T |
|
| Q |
240 |
gccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatcattatcagaagtacctctacctggcaggaaactgc |
339 |
Q |
| |
|
||||| | || ||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||| || ||||| ||||| || |||| |
|
|
| T |
53608534 |
gccacatagccttttttcttctttgatcttttcatataatgaataatttcctgcaaaacaatggagttatcagaagttcccctaccaggcagaaagctgc |
53608633 |
T |
|
| Q |
340 |
tctggtaggggccaatgatagtatctaggataggcct |
376 |
Q |
| |
|
| ||| | |||||||| ||| ||| ||||||||||| |
|
|
| T |
53608634 |
tttggcaagggccaataatattattaaggataggcct |
53608670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 40 - 379
Target Start/End: Original strand, 17718392 - 17718731
Alignment:
| Q |
40 |
gaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgat |
139 |
Q |
| |
|
||||||| || |||| ||| ||||| |||||||| || ||| |||| ||||| |||||||| | |||||||| ||||| |||| |||||||||||||| |
|
|
| T |
17718392 |
gaggatcaccctgtcagagaccatgagaaggcttgaagggaggcattttgtttccattccacaaaatagagaaggtggatgaggaaacacaatgcatgat |
17718491 |
T |
|
| Q |
140 |
aagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctttctcaaggtcaagcttaaat |
239 |
Q |
| |
|
||||| || || | || || || |||||||| || || || || | ||| || ||| | |||||||||||||||||||||||||| ||||| || |
|
|
| T |
17718492 |
gagcttgatggtgacgtccgggaaaccaaaatcctgcagacaagagttaagaaaatcccaattgacattatcaaaggctttctcaaggtctagcttgaaa |
17718591 |
T |
|
| Q |
240 |
gccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatcattatcagaagtacctctacctggcaggaaactgc |
339 |
Q |
| |
|
||||| | || ||||||||||| ||||| ||||| | |||||||||||||||||||||| ||||||||||| || ||||| ||||| || |||| |
|
|
| T |
17718592 |
gccacataaccttttttcttcttagatcttctcatgtaatgaatgatttcctgcaaaacaatggagttatcagaagttcccctaccaggcagaaagctgc |
17718691 |
T |
|
| Q |
340 |
tctggtaggggccaatgatagtatctaggataggcctgag |
379 |
Q |
| |
|
| ||||| |||||||| ||| ||| |||||||| ||||| |
|
|
| T |
17718692 |
tttggtaagggccaataatattattaaggataggtctgag |
17718731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 40 - 379
Target Start/End: Original strand, 19019621 - 19019960
Alignment:
| Q |
40 |
gaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgat |
139 |
Q |
| |
|
||||||| || |||| ||| ||||| |||||||| || ||| |||| ||||| |||||||| | |||||||| ||||| |||| |||||||||||||| |
|
|
| T |
19019621 |
gaggatcaccctgtcagagaccatgagaaggcttgaagggaggcattttgtttccattccacaaaatagagaaggtggatgaggaaacacaatgcatgat |
19019720 |
T |
|
| Q |
140 |
aagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctttctcaaggtcaagcttaaat |
239 |
Q |
| |
|
||||| || || | || || || |||||||| || || || || | ||| || ||| | |||||||||||||||||||||||||| ||||| || |
|
|
| T |
19019721 |
gagcttgatggtgacgtccgggaaaccaaaatcctgcagacaagagttaagaaaatcccaattgacattatcaaaggctttctcaaggtctagcttgaaa |
19019820 |
T |
|
| Q |
240 |
gccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatcattatcagaagtacctctacctggcaggaaactgc |
339 |
Q |
| |
|
||||| | || ||||||||||| ||||| ||||| | |||||||||||||||||||||| ||||||||||| || ||||| ||||| || |||| |
|
|
| T |
19019821 |
gccacataaccttttttcttcttagatcttctcatgtaatgaatgatttcctgcaaaacaatggagttatcagaagttcccctaccaggcagaaagctgc |
19019920 |
T |
|
| Q |
340 |
tctggtaggggccaatgatagtatctaggataggcctgag |
379 |
Q |
| |
|
| ||||| |||||||| ||| ||| |||||||| ||||| |
|
|
| T |
19019921 |
tttggtaagggccaataatattattaaggataggtctgag |
19019960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 397
Target Start/End: Original strand, 38647197 - 38647573
Alignment:
| Q |
21 |
atgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaag |
120 |
Q |
| |
|
||||| ||||| || ||| | ||||| ||||||||||| || ||||||||||||||||| |||| || || || |||||||||||||||| ||||| | |
|
|
| T |
38647197 |
atgaagaggtagggagagagcggatcaccttgtctgagaccgtgggaaggcttaaaagggggcattttattaccgttccaaagaatagagaaggtggatg |
38647296 |
T |
|
| Q |
121 |
aggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggcttt |
220 |
Q |
| |
|
| | |||||||||||||| ||||| || || || |||||||| |||||||| || ||||| || | ||||||| |||| | ||||||||||| ||||| |
|
|
| T |
38647297 |
atgaaacacaatgcatgatgagcttgatggtgatgtctggaaaaccaaaatcatgcaggcaagaattaaggaagtcccagttgacattatcaaaagcttt |
38647396 |
T |
|
| Q |
221 |
ctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatcattatcagaagtacct |
320 |
Q |
| |
|
|| |||||||| || |||| || | |||||||| || || ||| | ||||| || | |||||||||||||||| ||||||||| || ||| |
|
|
| T |
38647397 |
ttccaggtcaagtttgaatgttacataaccctttttatttttggattttctcatgaaatgtacaatttcctgcaaaacaattgaattatcagatgttcct |
38647496 |
T |
|
| Q |
321 |
ctacctggcaggaaactgctctggtaggggccaatgatagtatctaggataggcctgaggcgaaggacaagaacttt |
397 |
Q |
| |
|
||||| ||||| ||| |||| || ||| ||||||| ||| ||| || ||||| ||||| || | ||||||||||| |
|
|
| T |
38647497 |
ctaccaggcagaaaaatgctttgatagaggccaataatattattgagaataggtctgagacggtgcacaagaacttt |
38647573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 403
Target Start/End: Complemental strand, 23424633 - 23424251
Alignment:
| Q |
21 |
atgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaag |
120 |
Q |
| |
|
|||||||| ||||| ||| | || || ||||||||||| ||||| | ||||| ||||| |||| ||||| || ||||| | || |||| ||||| | |
|
|
| T |
23424633 |
atgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttacctttccataatattgagaatgtggagg |
23424534 |
T |
|
| Q |
121 |
aggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggcttt |
220 |
Q |
| |
|
||||||||||||| ||||| ||||| || || || |||||||| ||||| || |||||||| || | |||||| ||| || |||||||| || ||||| |
|
|
| T |
23424533 |
aggtgacacaatgtatgatgagcttgatggtgatgtctggaaaaccaaattcctgaaggcaagaattaaggaaatcccatctgacattatcgaatgcttt |
23424434 |
T |
|
| Q |
221 |
ctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatcattatcagaagtacct |
320 |
Q |
| |
|
||| | ||| ||||| || || || | || || ||| |||||||| ||||||| |||||| |||||||||||||||| ||||||||||| || |
|
|
| T |
23424433 |
ctccaagtctagcttgaaagcaacataacctttcttcctctttgatttcctcatgaagtgaataatttcctgcaaaacaattgagttatcagaagttccc |
23424334 |
T |
|
| Q |
321 |
ctacctggcaggaaactgctctggtaggggccaatgatagtatctaggataggcctgaggcgaaggacaagaactttggtgat |
403 |
Q |
| |
|
|||| ||||| || ||||| ||| | |||||||| | | || |||||||| ||||| ||| | ||||||||||| ||||| |
|
|
| T |
23424333 |
ctactaggcagaaatctgctttggcaagggccaataagattactgaggataggtctgagacgatgcacaagaactttagtgat |
23424251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 349
Target Start/End: Original strand, 11889809 - 11890082
Alignment:
| Q |
76 |
aaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttg |
175 |
Q |
| |
|
||||| |||| |||||||||||||| || || |||| |||||| ||||||||||| |||||||| ||||| || ||||||||||| || ||||| || || |
|
|
| T |
11889809 |
aaggaggcattttgttcccattccataggatggagaaagtggatgaggtgacacagtgcatgatgagctttatggtaatatctgggaaaccaaagtcatg |
11889908 |
T |
|
| Q |
176 |
aaggcatg-attaaaggaaggtccagcttacattatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcat |
274 |
Q |
| |
|
||||| | | | || ||| |||| | ||||||||||| |||||||| |||||||| || || || || | || || |||||||| |||||| ||| |
|
|
| T |
11889909 |
gaggcaagcacttaa-gaaatcccagttgacattatcaaaagctttctctaggtcaagtttgaaagctacatagcctttcttcttcttagatctctacat |
11890007 |
T |
|
| Q |
275 |
atggtgaatgatttcctgcaaaacaacatcattatcagaagtacctctacctggcaggaaactgctctggtaggg |
349 |
Q |
| |
|
| ||| | |||||||||||||||| | || |||| || || |||||||||||||| ||||| |||||||| |
|
|
| T |
11890008 |
aaagtgtacaatttcctgcaaaacaatagtgttgtcagccgtgcccctacctggcaggaagctgctttggtaggg |
11890082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 406
Target Start/End: Complemental strand, 573325 - 572939
Alignment:
| Q |
20 |
gatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaa |
119 |
Q |
| |
|
|||||| |||||||| ||| | ||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||| | |||||||| || | |
|
|
| T |
573325 |
gatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaaggatgcattttgttaccattccataaaatagagaacgttggt |
573226 |
T |
|
| Q |
120 |
gaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctt |
219 |
Q |
| |
|
|| |||||| ||||||||||||| || || || || |||||||| ||||| || |||||||| || | |||||| ||| || |||||| |||| |||| |
|
|
| T |
573225 |
gatgtgacataatgcatgataagtttgatggtgatgtctggaaatccaaactcatgaaggcaggaattaaggaaatcccatctgacattaccaaaagctt |
573126 |
T |
|
| Q |
220 |
tctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatcattatcagaagtacc |
319 |
Q |
| |
|
| || | ||| ||||| || || || | |||||| ||||| |||||| | ||||| |||| |||||||||||||||| ||||||||||| | |
|
|
| T |
573125 |
tttccaagtcgagcttgaaagcaacataccccttcttcttttttgattttctcatgaaatgaacaatttcctgcaaaacaattgagttatcagaagtttc |
573026 |
T |
|
| Q |
320 |
tctacctggcaggaaactgctctggtaggggccaatgatagtatctaggataggcctgaggcgaaggacaagaactttggtgatgat |
406 |
Q |
| |
|
||||| |||| |||||||| ||||| ||||| || || ||| || ||||| || || ||| | ||||||||||| |||||||| |
|
|
| T |
573025 |
cctaccatgcagaaaactgctttggtaagggccgataatgttattaagaataggtctaagacgatgcacaagaacttttgtgatgat |
572939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 355
Target Start/End: Complemental strand, 177646 - 177297
Alignment:
| Q |
6 |
ttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaa |
105 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||| || |||||||| || ||||| | |||||| | |||| || ||||| ||||||||||||| |
|
|
| T |
177646 |
ttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaagaa |
177547 |
T |
|
| Q |
106 |
tagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttac |
205 |
Q |
| |
|
||||| || ||||| ||||||||||||||||| || || |||||| ||| || || ||||||||||| || || ||| ||| || ||| | || |
|
|
| T |
177546 |
cagagaatgttgaagaagtgacacaatgcatgatgagtttgattgtatcatccgggaaaccaaaatcttggagacacgatctaagaaactcccaattcac |
177447 |
T |
|
| Q |
206 |
attatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatca |
305 |
Q |
| |
|
||| ||||| ||||||||||| ||||| || || || || | || |||||| | |||||||||| |||| |||| |||||||||||||||| | |
|
|
| T |
177446 |
attgtcaaaagctttctcaagatcaagtttgaaagcaacgtaaccttttttcctttttgatctccgcataaaatgaacaatttcctgcaaaacaatagag |
177347 |
T |
|
| Q |
306 |
ttatcagaagtacctctacctggcaggaaactgctctggtaggggccaat |
355 |
Q |
| |
|
|| |||||||| || |||||| ||||||||||||| |||||||| ||||| |
|
|
| T |
177346 |
ttgtcagaagtgcccctaccttgcaggaaactgctttggtagggaccaat |
177297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 54 - 403
Target Start/End: Complemental strand, 26791420 - 26791071
Alignment:
| Q |
54 |
ctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaa |
153 |
Q |
| |
|
||||||||||| | ||||| |||||| ||| | | || ||||||||||||||||||| |||| || || || ||||||||||| ||||| || || |
|
|
| T |
26791420 |
ctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaagaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatggtgg |
26791321 |
T |
|
| Q |
154 |
tatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctt |
253 |
Q |
| |
|
|||| || ||||||||||| |||||| ||| || ||| |||| | |||||||||||||||||||| | |||| |||||| ||||| | ||| || |
|
|
| T |
26791320 |
tatccgggaagccaaaatcacaaaggcaagatcggagaaagtcccagttaacattatcaaaggctttctctaaatcaatcttaaaagccacgtacccttt |
26791221 |
T |
|
| Q |
254 |
tttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatcattatcagaagtacctctacctggcaggaaactgctctggtaggggcca |
353 |
Q |
| |
|
|||||||| ||| | | ||| | |||||| | |||||||||||||| |||| |||| || | ||||| ||||||||||| || ||||| || ||| |
|
|
| T |
26791220 |
cttcttcttagatatgcgcatgtagtgaataacttcctgcaaaacaatggcattgtcagtggtgctcctaccaggcaggaaactactttggtaaggacca |
26791121 |
T |
|
| Q |
354 |
atgatagtatctaggataggcctgaggcgaaggacaagaactttggtgat |
403 |
Q |
| |
|
|| ||| ||| |||||||| ||||||||| ||||||| ||||| ||||| |
|
|
| T |
26791120 |
ataatattattaaggataggtctgaggcgatggacaaggactttagtgat |
26791071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 355
Target Start/End: Original strand, 42403415 - 42403566
Alignment:
| Q |
204 |
acattatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacat |
303 |
Q |
| |
|
||||||||||| ||||| || ||||||||||| || ||||| | ||||||||| | || ||||| ||||| || || |||||||||||||||| |
|
|
| T |
42403415 |
acattatcaaacgctttttccaggtcaagcttgaaggccacataaccctttttccttttggatcttttcataaaatgtataatttcctgcaaaacaattg |
42403514 |
T |
|
| Q |
304 |
cattatcagaagtacctctacctggcaggaaactgctctggtaggggccaat |
355 |
Q |
| |
|
||||||||||||||| ||||| || || ||||| || ||| |||||||||| |
|
|
| T |
42403515 |
aattatcagaagtacccctaccaggtagaaaactactttggcaggggccaat |
42403566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 1487402 - 1487487
Alignment:
| Q |
93 |
ccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaag |
178 |
Q |
| |
|
|||||||| | |||||||| |||||| || || ||||| ||||| ||||||||||| |||||||| || || |||||||| ||||| |
|
|
| T |
1487402 |
ccattccataaaatagagaaagtggatgaagtaacacagtgcataataagcttaatggtaatatcagggaaaccaaaatcatgaag |
1487487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 14653713 - 14653781
Alignment:
| Q |
42 |
ggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagag |
110 |
Q |
| |
|
||||| |||||| ||||||||| |||||||| ||||| ||| |||||||||||||||||| |||||| |
|
|
| T |
14653713 |
ggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagag |
14653781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 35062959 - 35063101
Alignment:
| Q |
6 |
ttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaa |
105 |
Q |
| |
|
||||||||||| | ||||||||| || || || | ||||| |||||||| || ||| | | |||||||| ||| |||||||||| |||||| | || | |
|
|
| T |
35062959 |
ttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtctaagaccacgtgtaggcttaagtggaggcatcttgttgccattctagagga |
35063058 |
T |
|
| Q |
106 |
tagagagagtggaagaggtgacacaatgcatgataagcttaat |
148 |
Q |
| |
|
| ||| |||||| |||| ||||||||||||||||| ||||| |
|
|
| T |
35063059 |
tcaagaaagtggatgaggcaacacaatgcatgataagtttaat |
35063101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 27781636 - 27781808
Alignment:
| Q |
9 |
tccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatag |
108 |
Q |
| |
|
||||| |||| |||||| |||||||| || |||| || ||||||||||||||||| | |||||||| ||| |||| |||||||| ||||| ||||| | |
|
|
| T |
27781636 |
tccatgcagaggatgaagaggtaaggtgaaagagggtcaccttgtctgaggccatgagttggcttaaatggaggcattttgttcccgttccatagaatgg |
27781735 |
T |
|
| Q |
109 |
agagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggca |
181 |
Q |
| |
|
||| |||||| ||||||||||| |||||||| ||||| || ||||||||||| || ||||| || |||||||| |
|
|
| T |
27781736 |
agaaagtggatgaggtgacacagtgcatgatgagctttatggtaatatctgggaaaccaaagtcatgaaggca |
27781808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 193
Target Start/End: Complemental strand, 27153340 - 27153204
Alignment:
| Q |
57 |
aggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatat |
156 |
Q |
| |
|
|||||||| ||||||| |||||| | ||||| ||||||||||| || ||||| ||||| || ||||||||||||||||| || ||||| |||||| ||| |
|
|
| T |
27153340 |
aggccatgataaggcttgaaaggaggaatcttattcccattccataggatagaaagagtcgaggaggtgacacaatgcataattagcttgattgtagtat |
27153241 |
T |
|
| Q |
157 |
ctggaaagccaaaatcttgaaggcatgattaaaggaa |
193 |
Q |
| |
|
|| |||||||||| ||||| | ||| |||| |||||| |
|
|
| T |
27153240 |
ctagaaagccaaagtcttggaagcaagattgaaggaa |
27153204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 355
Target Start/End: Original strand, 23207911 - 23208218
Alignment:
| Q |
48 |
ccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaa |
147 |
Q |
| |
|
|||||||| || ||||| | ||||| ||||| |||| ||||| || ||||| | ||| |||| ||||| |||||||| ||||||||||| || || | |
|
|
| T |
23207911 |
ccttgtctaagaccatgtgtgggcttgaaagggggcattttgttaccgttccataaaattgagaatgtggaggaggtgacgcaatgcatgatgagtttga |
23208010 |
T |
|
| Q |
148 |
ttgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctttctcaaggtcaagcttaaatgccacctg |
247 |
Q |
| |
|
| |||||||||||||| |||||||| || ||||| || | |||||| ||| || |||||||| || |||||||| | ||| ||||| || || || | |
|
|
| T |
23208011 |
tggtaatatctggaaaaccaaaatcctggaggcaagaattaaggaaatcccatctgacattatcgaaagctttctccaagtctagcttgaaagcaacata |
23208110 |
T |
|
| Q |
248 |
cccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatcattatcagaagtacctctacctggcaggaaactgctctggtag |
347 |
Q |
| |
|
|| || ||| ||||||| |||||||| |||||| |||||||||||||||| || |||||||| || ||||||||||| |||||||| ||| | |
|
|
| T |
23208111 |
acctttcttcctctttgacttcctcataaagtgaataatttcctgcaaaacaattgagttgtcagaagttcccctacctggcagaaaactgctttggcaa |
23208210 |
T |
|
| Q |
348 |
gggccaat |
355 |
Q |
| |
|
|||||||| |
|
|
| T |
23208211 |
gggccaat |
23208218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 1353792 - 1353930
Alignment:
| Q |
4 |
gtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaag |
103 |
Q |
| |
|
||||||||||||| | |||||||| || || ||| | ||||| |||||| |||||||||| | |||||| || ||| |||||| ||||||||| | || |
|
|
| T |
1353792 |
gtttttccatacaaagaatgaaaagatatggtgagagtggatcaccttgtatgaggccatgagtaggcttgaagggagacatctttttcccattcgagag |
1353891 |
T |
|
| Q |
104 |
aatagagagagtggaagaggtgacacaatgcatgataag |
142 |
Q |
| |
|
||||||| |||||| |||| || |||||||||||||| |
|
|
| T |
1353892 |
gatagagaaagtggaggaggcaacgcaatgcatgataag |
1353930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 16769962 - 16770203
Alignment:
| Q |
3 |
agtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaa |
102 |
Q |
| |
|
|||||||||||||| | |||||| || ||||| || ||||||| ||||||| || ||||| | ||| || ||| | ||| ||||| |||||||| | |
|
|
| T |
16769962 |
agtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccattccata |
16770061 |
T |
|
| Q |
103 |
gaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagct |
202 |
Q |
| |
|
|||||||| ||||||||| | ||||| ||||| ||||| || || ||||| ||||| || |||||||| || || || | ||| || ||| | |
|
|
| T |
16770062 |
aaatagagaaagtggaagaagaaacacagtgcataataagtttgatggtaatgtctgggaatccaaaatcatgcagacaattatgaagaaaatctcagtt |
16770161 |
T |
|
| Q |
203 |
tacattatcaaaggctttctcaaggtcaagcttaaatgccac |
244 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
16770162 |
gacattatcaaaagctttttcaaggtcaagcttaaaagccac |
16770203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 93 - 360
Target Start/End: Complemental strand, 13030264 - 13029997
Alignment:
| Q |
93 |
ccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaagga |
192 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||||||||||| || | || || ||||| ||||||||||| || ||||| | || ||| | |
|
|
| T |
13030264 |
ccattccaaaggatagaaagagttgaagaggtgacacaatgcatgatggatttggtagtgatttctgggaagccaaaatcctggaggcaagtttgaagaa |
13030165 |
T |
|
| Q |
193 |
aggtccagcttacattatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctg |
292 |
Q |
| |
|
| ||| | ||||||||||| | ||| ||||| ||||||||||| | | | |||||| || ||||| |||| |||||| |||||||||||||| |
|
|
| T |
13030164 |
aaaaccaattgacattatcaaaagttttttcaagatcaagcttaaaagtcgcaaaccccttctttttcttatatcttctcataaaatgaatgatttcctg |
13030065 |
T |
|
| Q |
293 |
caaaacaacatcattatcagaagtacctctacctggcaggaaactgctctggtaggggccaatgatag |
360 |
Q |
| |
|
||||| || |||| | ||||||||||||||| ||||||||||| || |||||||||||||| |||| |
|
|
| T |
13030064 |
caaaataatgacattgttagaagtacctctaccaggcaggaaactactttggtaggggccaataatag |
13029997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 406
Target Start/End: Complemental strand, 26587176 - 26586974
Alignment:
| Q |
204 |
acattatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacat |
303 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| || || || | || || ||| |||| ||| |||||||| |||| |||||||||||||||| | |
|
|
| T |
26587176 |
acattgtcaaatgctttctcaagatcaagcttgaaagcaacatagcctttcttcctcttagatttcctcataaagtgagcaatttcctgcaaaacaaaag |
26587077 |
T |
|
| Q |
304 |
cattatcagaagtacctctacctggcaggaaactgctctggtaggggccaatgatagtatctaggataggcctgaggcgaaggacaagaactttggtgat |
403 |
Q |
| |
|
|| ||| |||| || ||||||||||| |||||| | |||||||| ||||| ||| | | ||||| || ||||||||| ||||||| ||||||||||| |
|
|
| T |
26587076 |
agttgtcataagtgcccctacctggcagaaaactgatttggtagggaccaataatattgttaaggatcggtctgaggcgatggacaaggactttggtgat |
26586977 |
T |
|
| Q |
404 |
gat |
406 |
Q |
| |
|
||| |
|
|
| T |
26586976 |
gat |
26586974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 172
Target Start/End: Original strand, 26708706 - 26708872
Alignment:
| Q |
6 |
ttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaa |
105 |
Q |
| |
|
||||||||||| | |||||||||||||| ||| |||| || || || | || ||||| || |||||||| || | | |||||| |||||||| |||| |
|
|
| T |
26708706 |
ttttccatacacagtatgaaaaggtaaggagagagagggtcaccctggcgaagaccatgagatggcttaaattgaggaagcttgtttccattccatagaa |
26708805 |
T |
|
| Q |
106 |
tagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatc |
172 |
Q |
| |
|
| |||| ||| || || |||||||||||||| || ||||| | ||||| ||||| ||||||||||| |
|
|
| T |
26708806 |
ttgagaaagtagatgaagtgacacaatgcataatgagcttgctggtaatttctgggaagccaaaatc |
26708872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 355
Target Start/End: Complemental strand, 14759830 - 14759723
Alignment:
| Q |
248 |
cccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatcattatcagaagtacctctacctggcaggaaactgctctggtag |
347 |
Q |
| |
|
|||||| ||||| || ||||||||||| ||||| |||||||||||||||| ||||||||||| || || || ||||| |||||||| |||||| |
|
|
| T |
14759830 |
ccccttcttctttttggatctcctcatgaaatgaattatttcctgcaaaacaatggagttatcagaagtgcccctcccaggcagaaaactgctttggtag |
14759731 |
T |
|
| Q |
348 |
gggccaat |
355 |
Q |
| |
|
|||||||| |
|
|
| T |
14759730 |
gggccaat |
14759723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 38348371 - 38348268
Alignment:
| Q |
252 |
tttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatcattatcagaagtacctctacctggcaggaaactgctctggtaggggc |
351 |
Q |
| |
|
|||||||| |||||| | ||||| || || | ||||||||||||| || | |||||||||||| || ||||| |||||||| ||||| || ||||||| |
|
|
| T |
38348371 |
tttttcttttttgattttctcatgtgatggacaatttcctgcaaaataatagaattatcagaagttcccctaccaggcaggaagctgctttgataggggc |
38348272 |
T |
|
| Q |
352 |
caat |
355 |
Q |
| |
|
|||| |
|
|
| T |
38348271 |
caat |
38348268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 38348560 - 38348449
Alignment:
| Q |
63 |
tgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaa |
162 |
Q |
| |
|
||||||||||| |||||| || |||| ||||||||||| ||||||| |||| ||||| |||||||||||||| ||||| || || || ||||||| |
|
|
| T |
38348560 |
tgggaaggcttgaaaggagacaatctgttgccattccaaaggatagagaaggtgggtgaggtaacacaatgcatgatgagcttgatggtgatgtctggaa |
38348461 |
T |
|
| Q |
163 |
agccaaaatctt |
174 |
Q |
| |
|
| || ||||||| |
|
|
| T |
38348460 |
aaccgaaatctt |
38348449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 403
Target Start/End: Complemental strand, 9065 - 8717
Alignment:
| Q |
55 |
tgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaat |
154 |
Q |
| |
|
|||||||||| ||||||| |||||| ||| | | || ||||||||||||||||||| |||| ||||| || ||||||||||| ||||| || || | |
|
|
| T |
9065 |
tgaggccatgagaaggctcgaaaggaggcagcctattaccattccaaagaatagagaatctggatgaggtaacgcaatgcatgatgagcttgatggtggt |
8966 |
T |
|
| Q |
155 |
atctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggctttctcaaggtcaagcttaaatgccacctgccccttt |
254 |
Q |
| |
|
||| || ||||||||||| |||||| ||| || || |||| | ||||||||||| |||||||| | || | |||||| ||||| | || || |
|
|
| T |
8965 |
atccgggaagccaaaatcacaaaggcaagatcggagaaaatcccagttaacattatcaaaagctttctctaaatcgatcttaaaagccacgtatcctttc |
8866 |
T |
|
| Q |
255 |
ttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatcattatcagaagtacctctacctggcaggaaactgctctggtaggggccaa |
354 |
Q |
| |
|
|||||||| ||||| | ||| | |||||| |||||||||||||||| |||| |||| || || ||||| |||||||||||||| ||||| || |||| |
|
|
| T |
8865 |
ttcttcttggatcttcgcatgtagtgaataatttcctgcaaaacaatggcattgtcagtggtgcccctaccaggcaggaaactgctttggtaaggaccaa |
8766 |
T |
|
| Q |
355 |
tgatagtatctaggataggcctgaggcgaaggacaagaactttggtgat |
403 |
Q |
| |
|
| ||| || |||||||| |||||||| |||||||||| || ||||| |
|
|
| T |
8765 |
taatatcattaaggataggtctgaggcggtggacaagaaccttagtgat |
8717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 406
Target Start/End: Original strand, 31325048 - 31325352
Alignment:
| Q |
102 |
agaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagc |
201 |
Q |
| |
|
|||||||||| ||||| || | |||||| ||||||| ||||| ||||| || |||||||| || ||||| || ||||| || | |||||| ||| |
|
|
| T |
31325048 |
agaatagagaaggtggatgacgagacacagcgcatgatgagcttgattgtgatgtctggaaaaccgaaatcatggaggcaagaattaaggaaatcccaat |
31325147 |
T |
|
| Q |
202 |
ttacattatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaac |
301 |
Q |
| |
|
| ||||||||||| |||||||| |||||||| || || || || | ||||| |||||||| ||||| ||||| ||| | |||||||||||||||| |
|
|
| T |
31325148 |
tgacattatcaaaagctttctccaggtcaagtttgaaagctacgtaacccttcttcttcttggatcttctcatgaagtggacaatttcctgcaaaacaat |
31325247 |
T |
|
| Q |
302 |
atcattatcagaagtacctctacctggcaggaaactgctctggtaggggccaatgatagtatctaggataggcctgaggcgaaggacaagaactttggtg |
401 |
Q |
| |
|
||||||||||| || ||||| ||||| |||||||| ||||||||||||| ||| ||| || |||||||||||||| | ||||||||||| || |
|
|
| T |
31325248 |
tgagttatcagaagttcccctaccaggcagaaaactgcttcggtaggggccaataatattattgagaataggcctgaggcggtgcacaagaacttttgta |
31325347 |
T |
|
| Q |
402 |
atgat |
406 |
Q |
| |
|
||||| |
|
|
| T |
31325348 |
atgat |
31325352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 355
Target Start/End: Complemental strand, 50452030 - 50451696
Alignment:
| Q |
21 |
atgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaag |
120 |
Q |
| |
|
||||| |||||||| || | ||||| ||||||| ||||||||| | ||| || ||| | |||| ||||| |||||||| | ||||||| |||||| | |
|
|
| T |
50452030 |
atgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccataagatagagaaagtggagg |
50451931 |
T |
|
| Q |
121 |
aggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggcatgattaaaggaaggtccagcttacattatcaaaggcttt |
220 |
Q |
| |
|
|||||||||||||||||||||| || || || || || ||||| ||||| || |||||||| || | ||| || ||| | ||||||||||| ||||| |
|
|
| T |
50451930 |
aggtgacacaatgcatgataagtttgatggtgatgtccggaaaaccaaactcatgaaggcaagaattaagaaaatcccatttgacattatcaaatgcttt |
50451831 |
T |
|
| Q |
221 |
ctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatcattatcagaagtacct |
320 |
Q |
| |
|
|| | || ||||| || || || | || ||||||||||| || |||||||| ||||| |||||||||||||||| | ||||||||||| || |
|
|
| T |
50451830 |
ttccaaatcgagcttgaaagcaacataaccttttttcttcttagacttcctcataaaatgaataatttcctgcaaaacaatagagttatcagaagttccc |
50451731 |
T |
|
| Q |
321 |
ctacctggcaggaaactgctctggtaggggccaat |
355 |
Q |
| |
|
|||| ||||| || ||||| ||||| |||||||| |
|
|
| T |
50451730 |
ctactaggcagaaagctgctttggtaagggccaat |
50451696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 50236562 - 50236698
Alignment:
| Q |
3 |
agtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaa |
102 |
Q |
| |
|
||||| |||||||| | ||||||||||||||| || | ||||| |||| |||||||||||| | |||||| ||||| ||||||||||||| ||||| | |
|
|
| T |
50236562 |
agtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgttcccgttccata |
50236661 |
T |
|
| Q |
103 |
gaatagagagagtggaagaggtgacacaatgcatgat |
139 |
Q |
| |
|
|||||| |||| |||| ||||||||||||||| |
|
|
| T |
50236662 |
agatagagtaggtgggtgaggagacacaatgcatgat |
50236698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 355
Target Start/End: Complemental strand, 1524838 - 1524768
Alignment:
| Q |
285 |
atttcctgcaaaacaacatcattatcagaagtacctctacctggcaggaaactgctctggtaggggccaat |
355 |
Q |
| |
|
|||||||||||||||| | |||||||||||| || ||||| ||||| ||||| || || ||||||||||| |
|
|
| T |
1524838 |
atttcctgcaaaacaatagaattatcagaagttcccctaccaggcagaaaactactttgataggggccaat |
1524768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 1525060 - 1524984
Alignment:
| Q |
63 |
tgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgat |
139 |
Q |
| |
|
||||||||||| |||||| | | ||||| ||||||||||||||||||| | | |||||| |||||||||||||| |
|
|
| T |
1525060 |
tgggaaggcttgaaaggaggtaatttgttaccattccaaagaatagagaaggcaggagaggtaacacaatgcatgat |
1524984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 10103756 - 10103868
Alignment:
| Q |
82 |
gcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaaggca |
181 |
Q |
| |
|
|||| ||||| || ||||| | |||||||| ||| || | ||||| |||||||||||||| || || || ||||||| ||| ||||| ||||||||||| |
|
|
| T |
10103756 |
gcattttgttaccgttccataaaatagagaaagttgataaagtgacgcaatgcatgataagtttgatggtgatatctgaaaatccaaactcttgaaggca |
10103855 |
T |
|
| Q |
182 |
tgattaaaggaag |
194 |
Q |
| |
|
|| | ||||||| |
|
|
| T |
10103856 |
agaattaaggaag |
10103868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 32890565 - 32890489
Alignment:
| Q |
3 |
agtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaagg |
79 |
Q |
| |
|
||||||||||| || | ||||| ||||| || ||| | ||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
32890565 |
agtttttccatgcataaaatgaagaggtagggagagagcggatcaccttgtctgagaccgtgggaaggcttaaaagg |
32890489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 352
Target Start/End: Complemental strand, 23944964 - 23944819
Alignment:
| Q |
207 |
ttatcaaaggctttctcaaggtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatggtgaatgatttcctgcaaaacaacatcat |
306 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| | |||||||||| ||||| ||||| | ||||| |||||||||||||||| || |
|
|
| T |
23944964 |
ttatcaaaggatttctcaaggtcaagcttaaacgccacaaatcttgttttcttcttagatcttctcatgtaatgaataatttcctgcaaaacaatggaat |
23944865 |
T |
|
| Q |
307 |
tatcagaagtacctctacctggcaggaaactgctctggtaggggcc |
352 |
Q |
| |
|
|||||||||| || ||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
23944864 |
tatcagaagttcccctaccaggcagaaagctgctttggtaagggcc |
23944819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 32874499 - 32874563
Alignment:
| Q |
45 |
tctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaataga |
109 |
Q |
| |
|
|||||||| | ||||||||| |||||||| |||||| ||| |||||||||||| ||||| ||||| |
|
|
| T |
32874499 |
tctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaaggataga |
32874563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 400
Target Start/End: Original strand, 23620900 - 23621015
Alignment:
| Q |
285 |
atttcctgcaaaacaacatcattatcagaagtacctctacctggcaggaaactgctctggtaggggccaatgatagtatctaggataggcctgaggcgaa |
384 |
Q |
| |
|
|||||||||||||||| | || ||| |||| ||||||||| |||| |||| ||| |||||||| ||||| |||||||| ||||| |||| |||| |
|
|
| T |
23620900 |
atttcctgcaaaacaatagagttgtcaaaagtgcctctaccttgcagaaaaccgctttggtagggaccaataatagtatcaaggatcagcctaaggcagt |
23620999 |
T |
|
| Q |
385 |
ggacaagaactttggt |
400 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
23621000 |
ggacaaggactttggt |
23621015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 31814750 - 31814624
Alignment:
| Q |
48 |
ccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaa |
147 |
Q |
| |
|
||||||||||| ||||| || |||||||| || |||| ||||| ||||||||||| ||||| | ||| || |||| |||||||||||||| ||||| | |
|
|
| T |
31814750 |
ccttgtctgagaccatgagagggcttaaatggg-gcattttgttaccattccaaaggatagaaaaagtagatgaggaaacacaatgcatgatgagcttga |
31814652 |
T |
|
| Q |
148 |
ttgtaatatctggaaagccaaaatcttg |
175 |
Q |
| |
|
| || || | ||| |||||||| ||||| |
|
|
| T |
31814651 |
tagtgatgtatgggaagccaaagtcttg |
31814624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 355
Target Start/End: Complemental strand, 7817003 - 7816933
Alignment:
| Q |
285 |
atttcctgcaaaacaacatcattatcagaagtacctctacctggcaggaaactgctctggtaggggccaat |
355 |
Q |
| |
|
|||||||||||||||| | ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| |
|
|
| T |
7817003 |
atttcctgcaaaacaatagagttatctgaagtacccctaccaggcagaaaactgctttggtaagggccaat |
7816933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 5864756 - 5864888
Alignment:
| Q |
6 |
ttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaa |
105 |
Q |
| |
|
||||||||| |||||||||| ||||| ||| | | ||||| |||||||| || ||||| | |||||| || || |||||| ||||||||| | || | |
|
|
| T |
5864756 |
ttttccatatagatgatgaagaggtagggcaaagc-ggatcaccttgtctcagaccatgagtaggcttgaactgaagcatctcgttcccattgtagagga |
5864854 |
T |
|
| Q |
106 |
tagagagagtggaagaggtgacacaatgcatgat |
139 |
Q |
| |
|
|||||| |||||| |||| |||||||||||||| |
|
|
| T |
5864855 |
tagagaaagtggagaaggtaacacaatgcatgat |
5864888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University