View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713_low_12 (Length: 464)
Name: NF0713_low_12
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 2 - 305
Target Start/End: Complemental strand, 1364445 - 1364142
Alignment:
| Q |
2 |
tgtcgcagacctctagctaaagtaaatttctcagtgggactaccattcaataaaacagccgcagtagcagtcccaacacattctttcattcatttcctcc |
101 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1364445 |
tgtcgcagacctctagctaaagtgaatttctcagtgggactaccattcaataaaacagtcgcagtagcagtcccaacacattttttcattcatttcctcc |
1364346 |
T |
|
| Q |
102 |
aaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaactgaattgtatgccttcttaaagtcgactttaaataaaagcaattc |
201 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1364345 |
aaatagtcggaaacaacatcgtaaccataatatcatccaaatatttccaatcaactgaattgtatgctttcttaaagtcgactttaaataaaagcaattc |
1364246 |
T |
|
| Q |
202 |
nnnnnnnnnnnnnnnagattcatcaactacctaattagcaaccagaataccatctaaaatttgtcttcctttaataaatgctaaggacgcttttttgctt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| |
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| T |
1364245 |
ttttttcaattttttagattcatcaactacctaattagcaaccagaataccatctaaaatttgtattcctttaataaatgctaagggcacttttttgctt |
1364146 |
T |
|
| Q |
302 |
tcct |
305 |
Q |
| |
|
|||| |
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|
| T |
1364145 |
tcct |
1364142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 315 - 442
Target Start/End: Complemental strand, 1364106 - 1363979
Alignment:
| Q |
315 |
ggacacttttttgctattgtgcacatgtcaaaataaatcaagtttttatggatgtattagtacagaaattcaaacattggccgcggattagtaagaaacc |
414 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1364106 |
ggacacttttttgctattgtccacatgtcaaaacaaatcaagtttttatggatgtattagtacagaaattcaaacattgaccgcggattagtaagaaacc |
1364007 |
T |
|
| Q |
415 |
aaacatcctctaattcgaacttaaaact |
442 |
Q |
| |
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|||||||| ||||||||||| ||||||| |
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| T |
1364006 |
aaacatcccctaattcgaacataaaact |
1363979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 17952062 - 17952169
Alignment:
| Q |
44 |
ccattcaataaaacagccgcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaat |
143 |
Q |
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||||||| || || ||||||| ||| || ||||||||||||||||| ||||||||||||| | ||||||||| ||| ||| | |||||| ||||||||| |
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| T |
17952062 |
ccattcactagaatagccgcaatagttgtgccaacacattctttcatccatttcctccaaagattcggaaacaccattttacctataacaccatccaaat |
17952161 |
T |
|
| Q |
144 |
atttccaa |
151 |
Q |
| |
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|||||||| |
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|
| T |
17952162 |
atttccaa |
17952169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 32808864 - 32808966
Alignment:
| Q |
71 |
gtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaactgaattgtatgcct |
170 |
Q |
| |
|
||||||| ||||||||| || || || | ||||| ||||||||| ||| || | |||||||||||||||||| ||||||||| ||| |||||||| | |
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| T |
32808864 |
gtcccaatacattcttttatccacttacgccaaagtgtcggaaaccccattttcaacataacatcatccaaatagctccaatcaattgagttgtatgctt |
32808963 |
T |
|
| Q |
171 |
tct |
173 |
Q |
| |
|
||| |
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|
| T |
32808964 |
tct |
32808966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 15106505 - 15106368
Alignment:
| Q |
55 |
aacagccgcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatca |
154 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||||| |||||||||||| | ||||||| ||| || ||| | |||||||||| ||||| ||||| |
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| T |
15106505 |
aacagccgcattagccgtgccaacacattctttcatccatttcctccaatgattcggaaatggcatattgcccacaccatcatccaagtattttcaatct |
15106406 |
T |
|
| Q |
155 |
actgaattgtatgccttcttaaagtcgactttaaataa |
192 |
Q |
| |
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|| |||| ||||||||| | |||||| || |||||||| |
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| T |
15106405 |
acagaatcgtatgccttttcaaagtcaaccttaaataa |
15106368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 20691226 - 20691162
Alignment:
| Q |
77 |
acacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaa |
141 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| |||| |||| ||| ||||||| |||||||| |
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| T |
20691226 |
acacattctttcatccatttcctccaaagagtcagaaatgacattttacccataacgtcatccaa |
20691162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 21580459 - 21580552
Alignment:
| Q |
62 |
gcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaa |
155 |
Q |
| |
|
|||| ||||||||||||||| || || || ||||| | ||| | |||||||||| |||||| | |||||| || |||||||| |||||||||| |
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|
| T |
21580459 |
gcagaagcagtcccaacacactccttaatccatttgcgccacaaagtcggaaaccccatcttcatcataacttcctccaaataattccaatcaa |
21580552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 23877346 - 23877277
Alignment:
| Q |
92 |
catttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaactgaat |
161 |
Q |
| |
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||||||||||||| ||| ||||| |||| || |||| |||||||||||||||||||| ||||| |||| |
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| T |
23877346 |
catttcctccaaagagtgggaaaagacattttctccatcacatcatccaaatatttccattcaacggaat |
23877277 |
T |
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