View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713_low_13 (Length: 452)
Name: NF0713_low_13
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 29 - 432
Target Start/End: Original strand, 47695942 - 47696345
Alignment:
| Q |
29 |
aataattataaagcaactgcacagaaagaggagaagcaggagaagggatgggaatgaacttggttaattggttctatagttgcttctttgaaatgaacca |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47695942 |
aataattataaagcaactgcacagaaagaggagaagcaggagaagggatgggagtgaacttggttaattggttctatagttgcttctttgaaatgaacca |
47696041 |
T |
|
| Q |
129 |
aaagagccctgttgagtatattacacaaatatttcatctctggatttcagacaaacaaaagtttacaattcagatactactgttattaagcgatctttcc |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47696042 |
aaagagccctgttgagtatattacacaaatatttcatctctggatttcagacaaacaaaagtttacagttcagatactactgttattaagcgatctttcc |
47696141 |
T |
|
| Q |
229 |
ctaggttgtaactttgttcatttttacagttttgccaaaattcaatcagtttttcatccttttctgtaactttgtcatcctctactttccttactagtct |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47696142 |
ctaggttgtaactttgttcatttttacagttttgccaaaattcaatcagtttttcatccttttctgtaactttgtcctcctctactttccttactagtct |
47696241 |
T |
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| Q |
329 |
tatacattgctttttccttttgcagaaacctggaggaatcgttgctctccttgatgaagcttggtaaaatattgttctccttaatcaagcttgctagatg |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47696242 |
tatacattgctttttccttttgcagaaacctggaggaatcgttgctctccttgatgaagcttggtaaaatattgttctccttaatcaagcttgctagatg |
47696341 |
T |
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| Q |
429 |
atgt |
432 |
Q |
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|||| |
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| T |
47696342 |
atgt |
47696345 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 35827332 - 35827276
Alignment:
| Q |
340 |
ttttccttttgcagaaacctggaggaatcgttgctctccttgatgaagcttggtaaa |
396 |
Q |
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|||| ||||| |||||| | ||||||||| |||||||||| || ||||||||||||| |
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| T |
35827332 |
ttttgctttttcagaaatccggaggaatcattgctctcctcgacgaagcttggtaaa |
35827276 |
T |
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