View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0713_low_14 (Length: 441)

Name: NF0713_low_14
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0713_low_14
NF0713_low_14
[»] chr6 (9 HSPs)
chr6 (29-431)||(14860616-14861011)
chr6 (52-400)||(14858618-14858965)
chr6 (29-246)||(18676864-18677081)
chr6 (238-431)||(18675836-18676028)
chr6 (358-431)||(12351427-12351501)
chr6 (215-300)||(32983722-32983807)
chr6 (249-304)||(24172951-24173006)
chr6 (245-304)||(24557383-24557442)
chr6 (274-311)||(12351545-12351582)
[»] chr3 (5 HSPs)
chr3 (29-431)||(39924775-39925176)
chr3 (178-431)||(5027635-5027886)
chr3 (178-431)||(3276736-3276989)
chr3 (178-431)||(3273326-3273579)
chr3 (227-304)||(14308930-14309008)
[»] chr5 (3 HSPs)
chr5 (29-431)||(14405159-14405560)
chr5 (177-424)||(40667153-40667401)
chr5 (261-304)||(25942764-25942807)
[»] scaffold0882 (1 HSPs)
scaffold0882 (78-431)||(893-1237)
[»] scaffold0766 (1 HSPs)
scaffold0766 (78-431)||(2166-2510)
[»] scaffold0031 (1 HSPs)
scaffold0031 (92-431)||(89769-90112)
[»] scaffold0303 (1 HSPs)
scaffold0303 (178-431)||(20419-20670)
[»] chr1 (2 HSPs)
chr1 (178-431)||(16850488-16850741)
chr1 (275-431)||(21197546-21197699)
[»] scaffold0047 (1 HSPs)
scaffold0047 (198-431)||(8333-8566)
[»] scaffold0097 (1 HSPs)
scaffold0097 (172-431)||(31847-32101)
[»] chr8 (3 HSPs)
chr8 (178-334)||(39037714-39037876)
chr8 (228-311)||(37785822-37785904)
chr8 (358-431)||(39037626-39037696)
[»] chr2 (9 HSPs)
chr2 (172-311)||(20728018-20728157)
chr2 (357-427)||(26794814-26794884)
chr2 (269-336)||(2997092-2997157)
chr2 (178-239)||(24779619-24779680)
chr2 (270-310)||(24779570-24779610)
chr2 (228-299)||(21546631-21546703)
chr2 (173-309)||(25424055-25424190)
chr2 (261-311)||(4183083-4183133)
chr2 (244-304)||(39614658-39614718)
[»] scaffold0004 (2 HSPs)
scaffold0004 (237-427)||(113542-113729)
scaffold0004 (220-431)||(354510-354721)
[»] chr7 (6 HSPs)
chr7 (359-431)||(18070075-18070147)
chr7 (215-431)||(8595388-8595599)
chr7 (378-432)||(15889622-15889676)
chr7 (237-318)||(18069926-18070008)
chr7 (215-299)||(8826295-8826379)
chr7 (241-315)||(1907764-1907838)
[»] scaffold1744 (1 HSPs)
scaffold1744 (237-312)||(1098-1172)
[»] chr4 (1 HSPs)
chr4 (269-336)||(17983348-17983413)


Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 29 - 431
Target Start/End: Complemental strand, 14861011 - 14860616
Alignment:
Q  29 aaagaaaatatcatgaatgcagaatatagcattgaaataattaggccaatttgagaatcacataatcaattatgtaatgaaaatatttgtatgcaaaagt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14861011 aaagaaaatatcatgaatgcagaatatagcattgaaataattaggccaatttgagaatcacataatcaattatgtaatgaaaatatttgtatgcaaaagt 14860912  T
Q  129 caaaaccatgataatttgatttacgaaatgattaacatcaagctcaaatatattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgact 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14860911 caaaaccatgataatttgatttacgaaatgattaacatcaagctcaaatatattttcaatgtcaaaaccaattatgcaatttgtaaaataaattatgact 14860812  T
Q  229 tttcatgtaaaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaag 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14860811 tttcatgtaaaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaag 14860712  T
Q  329 tcctaatataaacnnnnnnnctcaagactcaagacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatc 428  Q
    |||||||||||||          || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14860711 tcctaatataaacaaa-------aaaactcaagacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatc 14860619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 52 - 400
Target Start/End: Complemental strand, 14858965 - 14858618
Alignment:
Q  52 atatagcattgaaataattaggccaatttgagaatcacataatcaattatgtaatgaaaatatttgtatgcaaaagtcaaaaccatgataatttgattta 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14858965 atatagcattgaaataattaggccaatttgagaatcacataatcaattatgtaatgaaaatatttgtatgcaaaagtcaaaaccatgataatttgattta 14858866  T
Q  152 cgaaatgattaacatcaagctcaaatatattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgacttttcatgtaaaaatattttcatg 251  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14858865 cgaaatgattaacatcaagctcaaatatattttcaatgtcaaaatcaattatgcaatttgtaaaataaattatgacttttcatgtaaaaatattttcatg 14858766  T
Q  252 taaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaacnnnnnnnctc 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  14858765 taaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaa-gaaaaaactc 14858667  T
Q  352 aagactcaagacttgatagcttgaatttcttttccgctttttgcttcgt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14858666 aagactcaagacttgatagcttgaatttcttttccgctttttgcatcgt 14858618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 29 - 246
Target Start/End: Complemental strand, 18677081 - 18676864
Alignment:
Q  29 aaagaaaatatcatgaatgcagaatatagcattgaaataattaggccaatttgagaatcacataatcaattatgtaatgaaaatatttgtatgcaaaagt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  18677081 aaagaaaatatcatgaatgcagaatatagcattgaaataattaggccaatttgaaaatcacataatcaattatgtaatgaaaatatttgcatgcaaaagt 18676982  T
Q  129 caaaaccatgataatttgatttacgaaatgattaacatcaagctcaaatatattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgact 228  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18676981 caaagccatgatattttgatttacgaaatgattaatatcaagctcaaatatattttcaatgtcaaaaccaattatgcaatttgtaaaataaattatgact 18676882  T
Q  229 tttcatgtaaaaatattt 246  Q
    ||||||||||||||||||    
T  18676881 tttcatgtaaaaatattt 18676864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 238 - 431
Target Start/End: Complemental strand, 18676028 - 18675836
Alignment:
Q  238 aaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatat 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18676028 aaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatat 18675929  T
Q  338 aaacnnnnnnnctcaagactcaagacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatc 431  Q
    ||||       |||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||    
T  18675928 aaac-aaaaaactcaagactcaagatttgatagcttgaatttcttttccgctttttgcatcgttgctcttctaggacttcttttgtccatcatc 18675836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 358 - 431
Target Start/End: Complemental strand, 12351501 - 12351427
Alignment:
Q  358 caagacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatc 431  Q
    |||||||||| ||||| ||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  12351501 caagacttgaaagcttaaatcttcttttccgctttttgcatctttgttcttctaggacttcttttgtcaatcatc 12351427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 32983807 - 32983722
Alignment:
Q  215 aataaattatgacttttcatgtaaaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcat 300  Q
    |||||||||||  |||||||| ||||||| ||| ||||||||| ||| || |||||||||| |||||||||||||||| |||||||    
T  32983807 aataaattatgggttttcatggaaaaataatttaatgtaaaatcactatatatgaaaatcaatgtgagtgtgtgatttcttttcat 32983722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 24173006 - 24172951
Alignment:
Q  249 atgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgaga 304  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||    
T  24173006 atgtaaaattacttgagatgaaaattattgtgagtgtgtgatttattttaatgaga 24172951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 24557383 - 24557442
Alignment:
Q  245 tttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgaga 304  Q
    ||||||||||||||||| ||  ||||||||| ||||||||||||||||||||| ||||||    
T  24557383 tttcatgtaaaattactatatgtgaaaatcaatgtgagtgtgtgatttattttaatgaga 24557442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 12351582 - 12351545
Alignment:
Q  274 cattgtgagtgtgtgatttattttcatgagagcttttt 311  Q
    |||||||| |||||||||||||||||||||||||||||    
T  12351582 cattgtgaatgtgtgatttattttcatgagagcttttt 12351545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 29 - 431
Target Start/End: Complemental strand, 39925176 - 39924775
Alignment:
Q  29 aaagaaaatatcatgaatgcagaatatagcattgaaataattaggccaatttgagaatcacataatcaattatgtaatgaaaatatttgtatgcaaaagt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39925176 aaagaaaatatcatgaatgcagaatatagcattgaaataattaggccaatttgagaatcacataatcaattatgtaatgaaaatatttgtatgcaaaagt 39925077  T
Q  129 caaaaccatgataatttgatttacgaaatgattaacatcaagctcaaatatattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgact 228  Q
    |||| |||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39925076 caaagccatgataatttgatttacgtaataattaaaatcaagctcaaatatattttcaatgtcaaaaccaattatgcaatttgtaaaataaattatgact 39924977  T
Q  229 tttcatgtaaaaatattttcatgtaaaattac-tttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttt-aaccacttacaataa 326  Q
    ||| ||||||||||| ||| ||||||||| || | || ||||||| |||||||||||||||||||||||| |||||| ||||||  || || |||||       
T  39924976 ttttatgtaaaaataattttatgtaaaatcacatataaatgaaaaccattgtgagtgtgtgatttattttaatgagaactttttctactacgtacaaatc 39924877  T
Q  327 agtcctaatataaacnnnnnnnctcaagactcaagacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtca 425  Q
    |||||||| | |||         | || |  |||||||||| ||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||    
T  39924876 agtcctaaaacaaa----taaaattaaaatccaagacttgaaagcttgaatcttcttttccgctttttgcatctttgttcttctaggacttcttttgtca 39924781  T
Q  426 atcatc 431  Q
    ||||||    
T  39924780 atcatc 39924775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 178 - 431
Target Start/End: Original strand, 5027635 - 5027886
Alignment:
Q  178 atattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgacttttcatgtaaaaatattttcatgtaaaattac-tttagatgaaaatcat 276  Q
    ||||||| ||||||||||  ||||||||||||||| ||||||||||| | |||||||||||||||||||| ||| ||||| || |||| |||||||||||    
T  5027635 atatttttaatgtcaaaaagaattatgcaatttgtaaaataaattataagttttcatgtaaaaatattttaatgcaaaatcacatttaaatgaaaatcat 5027734  T
Q  277 tgtgagtgtgtgatttattttcatgagagctttt-taaccacttacaataaagtcctaatataaacnnnnnnnctcaagactcaagacttgatagcttga 375  Q
    ||||||||||||||||||||||||||||||||||   || |||||| |||||||||||||| |||         | || | |||||||| || |||||||    
T  5027735 tgtgagtgtgtgatttattttcatgagagcttttggtactacttac-ataaagtcctaatacaaa----taaaattaaaattcaagactagaaagcttga 5027829  T
Q  376 at-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatc 431  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5027830 atattcttttccgctttttgcatcgttgttcttctaggacttcttttgtcaatcatc 5027886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 178 - 431
Target Start/End: Complemental strand, 3276989 - 3276736
Alignment:
Q  178 atattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgacttttcatgta-aaaata-ttttcatgtaaaatta-ctttagatgaaaatc 274  Q
    ||||||| |||||||||||||||||||||||||   ||||||||| || ||| ||||||| |||||| ||||||||  ||||||  |||| |||||||||    
T  3276989 atatttttaatgtcaaaaccaattatgcaattttcaaaataaattttggcttctcatgtaaaaaatagttttcatgctaaattagatttaaatgaaaatc 3276890  T
Q  275 attgtgagtgtgtgatttattttcatgagagc-tttttaaccacttacaataaagtcctaatataaacnnnnnnnctcaagactcaagacttgatagctt 373  Q
    | ||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| | | |           || || |||||||||||| |||    
T  3276889 actgtgagtgtatgatttattttcttgagagcttttttaaccacttacaataaagtcctaacacatataaaaat----aaaacccaagacttgataactt 3276794  T
Q  374 gaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatc 431  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  3276793 gaatttcttttccgctttttgcattgttgctcttctaggacttcttttgtcaatcatc 3276736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 178 - 431
Target Start/End: Complemental strand, 3273579 - 3273326
Alignment:
Q  178 atattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgacttttcatgta-aaaata-ttttcatgtaaaatta-ctttagatgaaaatc 274  Q
    ||||||| |||||||||||||||||||||||||   ||||||||| || ||| ||||||| |||||| ||||||||  ||||||  |||| |||||||||    
T  3273579 atatttttaatgtcaaaaccaattatgcaattttcaaaataaattttggcttctcatgtaaaaaatagttttcatgctaaattagatttaaatgaaaatc 3273480  T
Q  275 attgtgagtgtgtgatttattttcatgagagc-tttttaaccacttacaataaagtcctaatataaacnnnnnnnctcaagactcaagacttgatagctt 373  Q
    | ||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| | | |           || || |||||||||||| |||    
T  3273479 actgtgagtgtatgatttattttcttgagagcttttttaaccacttacaataaagtcctaacacatataaaaat----aaaacccaagacttgataactt 3273384  T
Q  374 gaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatc 431  Q
    ||||||||||||| |||||||| | |||| | ||||||||||||||||||||||||||    
T  3273383 gaatttcttttcctctttttgcattgttgcttttctaggacttcttttgtcaatcatc 3273326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 14308930 - 14309008
Alignment:
Q  227 cttttcatgtaaaaatattttcatgtaaaattac-tttagatgaaaatcattgtgagtgtgtgatttattttcatgaga 304  Q
    ||||||||| ||||||||||| ||||||||| || |||| |||| ||||||||||||||||||||||||||||||||||    
T  14308930 cttttcatgcaaaaatattttaatgtaaaatcacatttaaatgataatcattgtgagtgtgtgatttattttcatgaga 14309008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 29 - 431
Target Start/End: Original strand, 14405159 - 14405560
Alignment:
Q  29 aaagaaaatatcatgaatgcagaatatagcattgaaataattaggccaatttgagaatcacataatcaattatgtaatgaaaatatttgtatgcaaaagt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14405159 aaagaaaatatcatgaatgcagaatatagcattgaaataattaggccaatttgagaatcacataatcaattatgtaatgaaaatatttgtatgcaaaagt 14405258  T
Q  129 caaaaccatgataatttgatttacgaaatgattaacatcaagctcaaatatattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgact 228  Q
    |||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  14405259 caaagccatgataatttgatttacgtaataattaaaatcaagctcaaatatattttcaatgtcaaaaccaattatacaatttgtaaaataaattatgact 14405358  T
Q  229 tttcatgtaaaaatattttcatgtaaaattac-tttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttt-aaccacttacaataa 326  Q
    ||| ||||||||||| ||| ||||||||| || | || ||||||| |||||||||||||||||||||||| |||||| ||||||  || ||||||||       
T  14405359 ttttatgtaaaaataattttatgtaaaatcacatataaatgaaaaccattgtgagtgtgtgatttattttaatgagaactttttctactacttacaaatc 14405458  T
Q  327 agtcctaatataaacnnnnnnnctcaagactcaagacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtca 425  Q
    |||||||| | |||         | || |  |||||||||| ||||||||| |||||||||||||||||  || |||||||||||||| |||||||||||    
T  14405459 agtcctaaaacaaa----taaaattaaaatccaagacttgaaagcttgaatcttcttttccgctttttgtatctttgttcttctaggatttcttttgtca 14405554  T
Q  426 atcatc 431  Q
    ||||||    
T  14405555 atcatc 14405560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 177 - 424
Target Start/End: Original strand, 40667153 - 40667401
Alignment:
Q  177 tatattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgacttttcatgtaaaaatattttcatgtaaaattac-tttagatgaaaatca 275  Q
    |||||||| |||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||| ||| ||||| || |||| |||||||| |    
T  40667153 tatatttttaatgtcaaaatcaattatgcaatttgtaaaataaattctgactttttatgtaaaaatatttttatgcaaaatcacatttaaatgaaaatta 40667252  T
Q  276 ttgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaacnnnnnnnctcaagactcaagacttgatagcttga 375  Q
    |||||||||||||||||||||||  |||||||||||| ||||||| |||||||||||||||||||        |||||||||||||||||||||||||||    
T  40667253 ttgtgagtgtgtgatttattttctcgagagctttttatccacttataataaagtcctaatataaataaaaaaactcaagactcaagacttgatagcttga 40667352  T
Q  376 atttcttttccgctttttgcttcgttgttcttctaggacttcttttgtc 424  Q
    ||||||||||| |||||||| || |||||||| ||  | ||||||||||    
T  40667353 atttcttttccactttttgcatcattgttcttttaaaatttcttttgtc 40667401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 25942807 - 25942764
Alignment:
Q  261 tttagatgaaaatcattgtgagtgtgtgatttattttcatgaga 304  Q
    |||| |||||||||||| || |||||||||||||||||||||||    
T  25942807 tttatatgaaaatcattatgggtgtgtgatttattttcatgaga 25942764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0882 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: scaffold0882
Description:

Target: scaffold0882; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 78 - 431
Target Start/End: Original strand, 893 - 1237
Alignment:
Q  78 tttgagaatcacataatcaattatgtaatgaaaatatttgtatgcaaaagtcaaaaccatgataatttgatttacgaaatgattaacatcaagctcaaat 177  Q
    |||||||| ||| |||||||| ||||||||||||||||  ||||||||||| ||| ||||| ||||||||        || ||| | |||| || |||||    
T  893 tttgagaaccacgtaatcaatcatgtaatgaaaatatta-tatgcaaaagttaaagccatggtaatttga--------ataattcaaatcatgcacaaat 983  T
Q  178 atattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgacttttcatgtaaaaatattttcatgtaaaattac-tttagatgaaaatcat 276  Q
    | ||||| ||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||| ||| ||||| || |||| ||||||| |||    
T  984 aaatttttaatgtcaaaaccaattatgcaatttgtaaaataaattctgactttttatgtaaaaatatttttatgcaaaatcacatttaaatgaaaaccat 1083  T
Q  277 tgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaacnnnnnnnctcaagactcaagacttgatagcttgaa 376  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||       |||||||| |||||||||||||||||||    
T  1084 tgtgagtgtgtgatttatttttttgagagctttttaaccacttacaataaagttctaatataaac-aaaaaactcaagacacaagacttgatagcttgaa 1182  T
Q  377 tttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatc 431  Q
    ||||||||||||||||||| |||||| || |||||||||||||||||| ||||||    
T  1183 tttcttttccgctttttgcatcgttgctcgtctaggacttcttttgtccatcatc 1237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 78 - 431
Target Start/End: Complemental strand, 2510 - 2166
Alignment:
Q  78 tttgagaatcacataatcaattatgtaatgaaaatatttgtatgcaaaagtcaaaaccatgataatttgatttacgaaatgattaacatcaagctcaaat 177  Q
    |||||||| ||| |||||||| ||||||||||||||||  ||||||||||| ||| ||||| ||||||||        || ||| | |||| || |||||    
T  2510 tttgagaaccacgtaatcaatcatgtaatgaaaatatta-tatgcaaaagttaaagccatggtaatttga--------ataattcaaatcatgcacaaat 2420  T
Q  178 atattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgacttttcatgtaaaaatattttcatgtaaaattac-tttagatgaaaatcat 276  Q
    | ||||| ||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||| ||| ||||| || |||| ||||||| |||    
T  2419 aaatttttaatgtcaaaaccaattatgcaatttgtaaaataaattctgactttttatgtaaaaatatttttatgcaaaatcacatttaaatgaaaaccat 2320  T
Q  277 tgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaacnnnnnnnctcaagactcaagacttgatagcttgaa 376  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||       |||||||| |||||||||||||||||||    
T  2319 tgtgagtgtgtgatttatttttttgagagctttttaaccacttacaataaagttctaatataaac-aaaaaactcaagacacaagacttgatagcttgaa 2221  T
Q  377 tttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatc 431  Q
    ||||||||||||||||||| |||||| || |||||||||||||||||| ||||||    
T  2220 tttcttttccgctttttgcatcgttgctcgtctaggacttcttttgtccatcatc 2166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 92 - 431
Target Start/End: Original strand, 89769 - 90112
Alignment:
Q  92 aatcaattatgtaatgaaaatatttgtatgcaaaa-gtcaaaaccatgataatttgatttacgaaatgattaacatcaagctcaaatatattttcaatgt 190  Q
    ||||||||||||||||||||||||| ||||||||| |||||| ||||| | |||||||||| |||   ||  | |||   |||||||||||||| |||||    
T  89769 aatcaattatgtaatgaaaatattt-tatgcaaaaagtcaaatccatggtcatttgatttatgaataaatccaaatcttactcaaatatatttttaatgt 89867  T
Q  191 caaaaccaattatgcaatttgtcaaataaattatgacttttcatgtaaaaatattttcatgtaaaattactttagatga--aaatcattgtgagtgtgtg 288  Q
    ||||| |||||||||| |||   |||||||||||||| ||||||| ||||||||||||||||||||| |||| | || |  ||| |||||||||||||||    
T  89868 caaaatcaattatgcagttttggaaataaattatgacctttcatgcaaaaatattttcatgtaaaatcacttcatataataaaaacattgtgagtgtgtg 89967  T
Q  289 atttattttcatgagagctttttaaccacttacaataaagtc---ctaatataaacnnnnnnnctcaagactcaagacttgatagcttgaatttcttttc 385  Q
    |||||||||| |||||||||||||||||||||||||||||||   |||||||||||       ||||| |||||||||||||||| ||||||||||||||    
T  89968 atttattttcttgagagctttttaaccacttacaataaagtcctactaatataaac-aaaaaactcaacactcaagacttgatagtttgaatttcttttc 90066  T
Q  386 cgctttttgcttcgttgttcttctaggacttcttttgtcaatcatc 431  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  90067 cgctttttgcatcgttgttcttctaggacttcttttgtcaatcatc 90112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 178 - 431
Target Start/End: Complemental strand, 20670 - 20419
Alignment:
Q  178 atattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgacttttcatgtaaaaatattttcatgtaaaattac-tttagatgaaaatcat 276  Q
    ||||||| ||||||||||  ||||||||||||||| ||||||||||| | |||||||||||||||||||| ||  ||||| || |||| |||||||||||    
T  20670 atatttttaatgtcaaaaagaattatgcaatttgtaaaataaattataatttttcatgtaaaaatattttaattcaaaatcacatttaaatgaaaatcat 20571  T
Q  277 tgtgagtgtgtgatttattttcatgagagctttt-taaccacttacaataaagtcctaatataaacnnnnnnnctcaagactcaagacttgatagcttga 375  Q
    ||||||||||||||||||||||||||||||||||   || |||||| |||||||||||||| |||         | || | |||||||| || |||||||    
T  20570 tgtgagtgtgtgatttattttcatgagagcttttggtactacttac-ataaagtcctaatacaaa----taaaattaaaattcaagactagaaagcttga 20476  T
Q  376 at-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatc 431  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20475 atattcttttccgctttttgcatcgttgttcttctaggacttcttttgtcaatcatc 20419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 178 - 431
Target Start/End: Complemental strand, 16850741 - 16850488
Alignment:
Q  178 atattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgacttttcatgta-aaaata-ttttcatgtaaaatta-ctttagatgaaaatc 274  Q
    ||||||| |||||||||||||||||||||||||   ||||||||| || ||| ||||||| |||||| ||||||||  ||||||  |||| |||||||||    
T  16850741 atatttttaatgtcaaaaccaattatgcaattttcaaaataaattttggcttctcatgtaaaaaatagttttcatgctaaattagatttaaatgaaaatc 16850642  T
Q  275 attgtgagtgtgtgatttattttcatgagagc-tttttaaccacttacaataaagtcctaatataaacnnnnnnnctcaagactcaagacttgatagctt 373  Q
    | || |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| | | |           || || |||||||||||| |||    
T  16850641 actgggagtgtatgatttattttcttgagagcttttttaaccacttacaataaagtcctaacacatataaaaat----aaaacccaagacttgataactt 16850546  T
Q  374 gaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatc 431  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  16850545 gaatttcttttccgctttttgcattgttgctcttctaggacttcttttgtcaatcatc 16850488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 275 - 431
Target Start/End: Complemental strand, 21197699 - 21197546
Alignment:
Q  275 attgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaacnnnnnnnctcaagactcaagacttgatagcttg 374  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||| || |||||||||           || |  ||||||  || ||||||    
T  21197699 attgtgagtgtgtgatttattttcttgagagatttttaaccacttacaataaattcgtaatataaataaaaat----aaaatccaagacaagaaagcttg 21197604  T
Q  375 aat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatc 431  Q
    ||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  21197603 aatattcttttccgctttttgcatctttgttcttctaggacttcttttgtcaatcatc 21197546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 198 - 431
Target Start/End: Complemental strand, 8566 - 8333
Alignment:
Q  198 aattatgcaatttgtcaaataaattatgacttttcatgtaaaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgattta-ttt 296  Q
    |||||||||||||    ||| ||||||| ||||||||| ||||||||||| ||||||||| |||||| ||||||| ||||||||||||||||| || |||    
T  8566 aattatgcaatttacataattaattatggcttttcatgcaaaaatatttttatgtaaaatcactttatatgaaaaacattgtgagtgtgtgatatatttt 8467  T
Q  297 tcatgagagcttttt-aaccacttacaataaagtcctaatataaacnnnnnnnctcaagactcaagacttgatagcttgaat-ttcttttccgctttttg 394  Q
    | |||||||||||||  || |||||||  |||||||||| | |||         | || |  |||||||||| ||||||||| |||||||| ||||||||    
T  8466 taatgagagctttttctactacttacataaaagtcctaaaacaaa---taaaaattaaaatccaagacttgaaagcttgaatcttcttttcggctttttg 8370  T
Q  395 cttcgttgttcttctaggacttcttttgtcaatcatc 431  Q
    | || ||||||||||||||||||||||||||||||||    
T  8369 catctttgttcttctaggacttcttttgtcaatcatc 8333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 431
Target Start/End: Original strand, 31847 - 32101
Alignment:
Q  172 tcaaatatattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgacttttcatgtaaaaatattttcatgtaaaattacttt-agatgaa 270  Q
    ||||||||||||| ||||||||||| |||||| |||||| | |||| |||| |   |||||||| ||||| ||||||||| ||||||||||| | || ||    
T  31847 tcaaatatatttttaatgtcaaaac-aattatacaatttctaaaatcaattctcggttttcatgcaaaaacattttcatgcaaaattacttttaaataaa 31945  T
Q  271 aatcattgtgagtgtgtgatttattttcatgagagcttttt-aaccacttacaataaagtcctaatataaacnnnnnnnctcaagactcaagacttgata 369  Q
    ||||| |||||||||||||| ||||||||||||||||||||  || | |||| |||||||||||||| | |           || |  ||||||| || |    
T  31946 aatcaatgtgagtgtgtgatgtattttcatgagagctttttctactatttac-ataaagtcctaataaataaaaat------aaaatccaagactagaaa 32038  T
Q  370 gcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatc 431  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||||||| |||||||||||||    
T  32039 gcttgaatattcttttccgctttatgcatcgttgttcttctaggacttcatttgtcaatcatc 32101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 178 - 334
Target Start/End: Complemental strand, 39037876 - 39037714
Alignment:
Q  178 atattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgacttttcatgtaaaaa-ta-ttttcatgtaaaattac-tttagatgaaaatc 274  Q
    ||||||| |||||||||||||||||||| ||||   ||||||||| || ||| ||||||||||| || ||||||||  ||||||  |||| |||||||||    
T  39037876 atatttttaatgtcaaaaccaattatgccattttcaaaataaattttggcttctcatgtaaaaaatagttttcatgctaaattagatttaaatgaaaatc 39037777  T
Q  275 attgtgagtgtgtgatttattttcatgagagct---ttttaaccacttacaataaagtcctaa 334  Q
    ||||||||||| |||||||||||| ||||||||   ||||||||||||| |||||||||||||    
T  39037776 attgtgagtgtatgatttattttcttgagagcttttttttaaccacttaaaataaagtcctaa 39037714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 37785904 - 37785822
Alignment:
Q  228 ttttcatgtaaaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttt 311  Q
    ||||| |||||||||||||||| ||||||| ||||| ||  |||| ||||||| |||||||||||||||| ||||||| |||||    
T  37785904 ttttcctgtaaaaatattttcacgtaaaatcacttt-gaaaaaaaacattgtgggtgtgtgatttattttaatgagagtttttt 37785822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 431
Target Start/End: Complemental strand, 39037696 - 39037626
Alignment:
Q  358 caagacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatc 431  Q
    |||||||||||| ||||||||||||||||||||||||   | ||| ||||||| ||||| ||||||||||||||    
T  39037696 caagacttgataacttgaatttcttttccgctttttg---cattgctcttctaagacttattttgtcaatcatc 39037626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 172 - 311
Target Start/End: Original strand, 20728018 - 20728157
Alignment:
Q  172 tcaaatatattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgacttttcatgtaaaaatattttcatgtaaaattacttt-agatgaa 270  Q
    ||||||||||||| ||||||||||| |||||| |||||| | |||| |||| |   |||||||| ||||| ||||||||| ||||||||||| | || ||    
T  20728018 tcaaatatatttttaatgtcaaaac-aattatacaatttctaaaatcaattctcggttttcatgcaaaaacattttcatgcaaaattacttttaaataaa 20728116  T
Q  271 aatcattgtgagtgtgtgatttattttcatgagagcttttt 311  Q
    ||||| |||||||||||||| ||||||||||||||||||||    
T  20728117 aatcaatgtgagtgtgtgatgtattttcatgagagcttttt 20728157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 427
Target Start/End: Complemental strand, 26794884 - 26794814
Alignment:
Q  357 tcaagacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaat 427  Q
    |||||||| | ||||||||||||||||| |||||  ||| |||||||||||||| ||||||||||||||||    
T  26794884 tcaagactcggtagcttgaatttctttttcgcttactgcatcgttgttcttctaagacttcttttgtcaat 26794814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 2997092 - 2997157
Alignment:
Q  269 aaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaata 336  Q
    |||| |||||| |||||||||||||||||||||||||  |||||||||||||||| || |||||||||    
T  2997092 aaaaacattgttagtgtgtgatttattttcatgagag--ttttaaccacttacaacaatgtcctaata 2997157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 24779680 - 24779619
Alignment:
Q  178 atattttcaatgtcaaaaccaattatgcaatttgtcaaataaattatgacttttcatgtaaa 239  Q
    ||||||| ||||||||||  ||||||||||||||| ||||||||||| | ||||||||||||    
T  24779680 atatttttaatgtcaaaaataattatgcaatttgtaaaataaattataaattttcatgtaaa 24779619  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 24779610 - 24779570
Alignment:
Q  270 aaatcattgtgagtgtgtgatttattttcatgagagctttt 310  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  24779610 aaatcattgcgagtgtgtgatttattttcatgagagctttt 24779570  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 21546631 - 21546703
Alignment:
Q  228 ttttcatgtaaaaatattttcatgtaaaattactt-tagatgaaaatcattgtgagtgtgtgatttattttca 299  Q
    |||| ||||||||||||||||||| ||| | |||| ||  ||||||||||  |||||||||||||||||||||    
T  21546631 tttttatgtaaaaatattttcatgcaaagtcacttatatttgaaaatcatcttgagtgtgtgatttattttca 21546703  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 309
Target Start/End: Original strand, 25424055 - 25424190
Alignment:
Q  173 caaatatattttcaatgtcaaaaccaattatgcaatttgtcaaata-aattatgacttttcatgtaaaaatattttcatgtaaaattac-tttagatgaa 270  Q
    |||||||||||| ||| | ||||| | |||||||||||  |||| | ||||||| ||||||||  ||||| ||||| ||| ||||| || |||| |||||    
T  25424055 caaatatatttttaat-taaaaactatttatgcaattttccaaaaataattatggcttttcatacaaaaacattttaatgcaaaatcacatttaaatgaa 25424153  T
Q  271 aatcattgtgagtgtgtgatttattttcatgagagcttt 309  Q
    ||||| ||  ||||  |||||||||||||||||||||||    
T  25424154 aatcaatg--agtgcatgatttattttcatgagagcttt 25424190  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 4183083 - 4183133
Alignment:
Q  261 tttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttt 311  Q
    |||| |||||||| ||||||| ||||||||||||||| | |||||||||||    
T  4183083 tttaaatgaaaattattgtgaatgtgtgatttatttttaagagagcttttt 4183133  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 39614658 - 39614718
Alignment:
Q  244 ttttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgaga 304  Q
    |||||||| ||||| || ||| |||||||| | ||| ||||||||||||||||||| ||||    
T  39614658 ttttcatgcaaaatcacattatatgaaaataactgtaagtgtgtgatttattttcaagaga 39614718  T

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Target: scaffold0004 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 237 - 427
Target Start/End: Original strand, 113542 - 113729
Alignment:
Q  237 aaaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttt-aaccacttacaataaagtcctaat 335  Q
    ||||||| ||||||| ||||| |  |||||||||||| ||||||| || ||||||||||||||||||||||||||  || |||||| |||||||||||||    
T  113542 aaaaataatttcatgcaaaatcatgttagatgaaaattattgtgactgcgtgatttattttcatgagagctttttctactacttac-ataaagtcctaat 113640  T
Q  336 ataaacnnnnnnnctcaagactcaagacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaat 427  Q
    |||||           || |  ||||||| || ||||||||| |||||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  113641 ataaataaaaat----aaaatccaagactagaaagcttgaatcttcttttccgctttttgcatcgctgttcttctaggacttcatttgtcaat 113729  T

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Target: scaffold0004; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 220 - 431
Target Start/End: Original strand, 354510 - 354721
Alignment:
Q  220 attatgacttttcatgtaaaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcat-gagagcttttta-accac 317  Q
    |||||| ||||  ||| ||||||||||| ||||||||| |||||| ||||||| ||||||||||||||||| |||||| |  |||||||||||  || ||    
T  354510 attatggctttatatgcaaaaatatttttatgtaaaatcactttatatgaaaaacattgtgagtgtgtgatatatttttaacgagagctttttctactac 354609  T
Q  318 ttacaataaagtcctaatataaacnnnnnnnctcaagactc-aagacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggact 415  Q
    |||||  |||||||||| | |||            ||| || ||||||||| ||||||||| |||||||||||||||||| || ||||||||||||||||    
T  354610 ttacataaaagtcctaaaacaaataaaaatt----agaatctaagacttgaaagcttgaatcttcttttccgctttttgcatctttgttcttctaggact 354705  T
Q  416 tcttttgtcaatcatc 431  Q
    ||||||||||||||||    
T  354706 tcttttgtcaatcatc 354721  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 359 - 431
Target Start/End: Original strand, 18070075 - 18070147
Alignment:
Q  359 aagacttgatagcttgaatttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatc 431  Q
    |||||||||||||||||||||||||||||| |||| | || ||||||||||||||||||||||||||||||||    
T  18070075 aagacttgatagcttgaatttcttttccgccttttacatctttgttcttctaggacttcttttgtcaatcatc 18070147  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 215 - 431
Target Start/End: Original strand, 8595388 - 8595599
Alignment:
Q  215 aataaattatgacttttcatgtaaaaatattttcatgtaaaattacttt-agatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttt-a 312  Q
    ||||||||||| ||||||||| ||||||||||||||| ||||| ||||| | || |||| |||||  ||||||||||||||||| |||||||||||||      
T  8595388 aataaattatggcttttcatg-aaaaatattttcatgcaaaatcacttttaaataaaaaccattg--agtgtgtgatttattttaatgagagctttttct 8595484  T
Q  313 accacttacaataaagtcctaatataaacnnnnnnnctcaagactcaagacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctag 411  Q
    || |||||||| | |||||||| | |||           || |  ||||||||||  |||||||| |||||||||||||||||| |  ||| ||||||||    
T  8595485 actacttacaa-atagtcctaaaacaaataaaaat----aaaatccaagacttgaaggcttgaatcttcttttccgctttttgcatttttgatcttctag 8595579  T
Q  412 gacttcttttgtcaatcatc 431  Q
    ||||||||||||||||||||    
T  8595580 gacttcttttgtcaatcatc 8595599  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 432
Target Start/End: Complemental strand, 15889676 - 15889622
Alignment:
Q  378 ttcttttccgctttttgcttcgttgttcttctaggacttcttttgtcaatcatct 432  Q
    |||||||||||||||||| || |||||| ||||||||||||||||||||||||||    
T  15889676 ttcttttccgctttttgcatctttgttcatctaggacttcttttgtcaatcatct 15889622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 18069926 - 18070008
Alignment:
Q  237 aaaaatattttcatgtaaaattac-tttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccact 318  Q
    ||||||||||| ||| ||||| |  |||| |||||||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  18069926 aaaaatattttaatgcaaaatcatgtttatatgaaaaatattgtgagtatgtgatttattttcatgagagctttttaaccact 18070008  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 8826379 - 8826295
Alignment:
Q  215 aataaattatgacttttcatgtaaaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttca 299  Q
    ||||||||||   |||||||| ||||| | ||||| | |||||||||||| ||||||||||||||||  ||||||||||||||||    
T  8826379 aataaattatagtttttcatgcaaaaaaagtttcaagaaaaattactttatatgaaaatcattgtgacggtgtgatttattttca 8826295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 1907838 - 1907764
Alignment:
Q  241 atattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagctttttaacc 315  Q
    |||||||||| |||||| ||| || ||||||||| | |||| ||||||| |||||||||||||||  ||||||||    
T  1907838 atattttcatttaaaatcactgtacatgaaaatcttcgtgaatgtgtgacttattttcatgagagtcttttaacc 1907764  T

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Target: scaffold1744 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold1744
Description:

Target: scaffold1744; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 1098 - 1172
Alignment:
Q  237 aaaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttta 312  Q
    ||||||||||||||||||||| ||||| ||  || || ||||||||||||||||||||||| ||||||||||||||    
T  1098 aaaaatattttcatgtaaaatcactttcgaaaaagat-attgtgagtgtgtgatttattttaatgagagcttttta 1172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 17983348 - 17983413
Alignment:
Q  269 aaaatcattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaata 336  Q
    |||| |||||| |||||||||||||||||||||||||  |||||||||||||||| || |||||||||    
T  17983348 aaaaacattgttagtgtgtgatttattttcatgagag--ttttaaccacttacaacaatgtcctaata 17983413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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