View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713_low_16 (Length: 434)
Name: NF0713_low_16
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 31 - 410
Target Start/End: Original strand, 15169588 - 15169969
Alignment:
| Q |
31 |
ttcattcattaaaa-atatatttaattgagtgtatgaaatctatataaaatagttcttccatattctcacttttttcgatattgtagaaaaacatcagtg |
129 |
Q |
| |
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|||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
15169588 |
ttcattcattaaaaaatatatttaaatgagtgtatgaaatctatttaaaatagttctttcatattctcacttttttcgatattgtagaaaaacatcattg |
15169687 |
T |
|
| Q |
130 |
gtgggttgagggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttcagctatttgattggcaattgtgaaacaaaagaagagat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15169688 |
gtgggttgagggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttcagctatttgattggcaattgtgaaacaaaagaagagat |
15169787 |
T |
|
| Q |
230 |
t-aaaaagtaagttgagtttaataatttcatatatacaagtttgggggcctctgagcgggtttttggtccgattcctggtttcatgtgtcttatatctct |
328 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15169788 |
taaaaaagtaagttgagtttaataatttcatatatacaagtttgggggcctctgagcgggtttttggtccgattcctggtttcatgtgtcttatatctct |
15169887 |
T |
|
| Q |
329 |
ggtggagcttgcttggtccattcttcgtttgttttgggcactatgagggagggagatttcttgtgttgttgtttttgtgatg |
410 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15169888 |
ggtggagtttgcttggtccattcttcgtttgttttgggcactatgagggagggagatttcttgtgttgttgtttttgtgatg |
15169969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 29 - 398
Target Start/End: Original strand, 15165319 - 15165690
Alignment:
| Q |
29 |
acttcattcattaaaaatatatttaattgagtgtatgaaatctatataaaatagttcttccatattctcacttttttcgatattgtagaaaaacatcagt |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15165319 |
acttcattcattaaaaatatatttaattgagtgtatgaaatctatataaaatagttcttccatattctcactttt-tcgatattgtagaaaaacatcagt |
15165417 |
T |
|
| Q |
129 |
ggtgggttgagggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttcagctatttgattggcaattgtgaaacaaaagaagaga |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15165418 |
ggtgggttgagggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttcagctatttgattggcaattgtgcaacaaaagaagaga |
15165517 |
T |
|
| Q |
229 |
tt-aaaaagtaagttgagtttaataatttcatatatacaagtttgggggcctctgagcggg--tttttggtccgattcctggtttcatgtgtcttatatc |
325 |
Q |
| |
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|| |||||||| | |||||||||||||||||||||| ||||||||||||||| |||||||| |||||| || |||||||| ||||||||||||||| || |
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| T |
15165518 |
ttaaaaaagtacgatgagtttaataatttcatatattcaagtttgggggcctttgagcgggtttttttgatctgattcctgatttcatgtgtcttatctc |
15165617 |
T |
|
| Q |
326 |
tctggtggagcttgcttggtccattcttcgtttgttttgggcactatgagggagggagatttcttgtgttgtt |
398 |
Q |
| |
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||| |||||| | | |||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
15165618 |
tctagtggagttggtttggtccattcttcctttgttttgggtgctactagggagggagatttcttgtgttgtt |
15165690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 31 - 410
Target Start/End: Original strand, 29710626 - 29711010
Alignment:
| Q |
31 |
ttcattcattaaaa-atatatttaattgagtgtatgaaatctatataaaatagttcttccatattctcacttttttcgatattgtagaaaaacatcagtg |
129 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| | || |
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| T |
29710626 |
ttcattcattaaaaaatatatttaaatgagtgtatgaaatctatttaaaatagttctttcatattctcacttttatcgatattgtagaaaaacaaaattg |
29710725 |
T |
|
| Q |
130 |
gtgggttgagggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttcagctatttgattggcaattgtgaaacaaaagaagagat |
229 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
29710726 |
gtgggttgaaggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttcagctatttgattgaaaattgtgaaacaaaagaagagat |
29710825 |
T |
|
| Q |
230 |
taa-aaagtaagttgagtttaataatttcatatatacaagtt--tgggggcctctgagc-gggtttttggtccgattcctggtttcatgtgtcttatatc |
325 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||| ||||||||| ||| | ||||||||||| ||| | ||| ||||||||||||||| || |
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| T |
29710826 |
taagaaagtaagttgagtttaataatttcatatattcaagtttgtgggggcctatgaacggggtttttggttcgactactgatttcatgtgtcttatctc |
29710925 |
T |
|
| Q |
326 |
tctggtggagcttgcttggtccattcttcgtttgttttgggcactatgagggagggagatttcttgtgttgttgtttttgtgatg |
410 |
Q |
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| T |
29710926 |
tctggtggggttggcttggtccattcttcatttgttttgggcaccatgagggatggagatttcttgtgttgttgtttttgtgatg |
29711010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 31 - 410
Target Start/End: Complemental strand, 55804833 - 55804449
Alignment:
| Q |
31 |
ttcattcattaaaaa-tatatttaattgagtgtatgaaatctatataaaatagttcttccatattctcacttttttcgatattgtagaaaaacatcagtg |
129 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| | || |
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| T |
55804833 |
ttcattcattaaaaaatatatttaaatgagtgtatgaaatctatttaaaatagttctttcatattctcacttttatcgatattgtagaaaaacaaaattg |
55804734 |
T |
|
| Q |
130 |
gtgggttgagggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttcagctatttgattggcaattgtgaaacaaaagaagagat |
229 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55804733 |
gtgggttggaggttctcaaacaaatgcgagatgccaacgtaaagctcgattcatacactttcagctatttgattgaaaattgtgaaacaaaagaagagat |
55804634 |
T |
|
| Q |
230 |
taa-aaagtaagttgagtttaataatttcatatatacaagtt--tgggggcctctgagc-gggtttttggtccgattcctggtttcatgtgtcttatatc |
325 |
Q |
| |
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||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||| ||| ||||| ||||||||||||||| || |
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|
| T |
55804633 |
taagaaagtaagttgagtttaataatttcatatattcaagtttgtgggggcctctgaacggggtttttggttcgactcctgatttcatgtgtcttatctc |
55804534 |
T |
|
| Q |
326 |
tctggtggagcttgcttggtccattcttcgtttgttttgggcactatgagggagggagatttcttgtgttgttgtttttgtgatg |
410 |
Q |
| |
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|||||||| | | |||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
55804533 |
tctggtggggttggcttggtccattcttcatttgttttgggcaccatgagggatggagatttcttgtgttgttgtttttgtgatg |
55804449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 75 - 263
Target Start/End: Original strand, 31464796 - 31464985
Alignment:
| Q |
75 |
taaaatagttcttccatattctcacttttttcgatattgtagaaaaacatcagtggtgggttgagggttctcaaacaaatgcgagatgccaacataaagc |
174 |
Q |
| |
|
||||||| ||| | ||| ||||||| |||| ||| ||||||||||||||||||||||| || ||||| |||||||| |||| ||| ||||| |||||| |
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|
| T |
31464796 |
taaaataattcattcattttctcaccttttccgaaattgtagaaaaacatcagtggtgccttaagggtcctcaaacacatgcaagaggccaatgtaaagc |
31464895 |
T |
|
| Q |
175 |
tcgattcatacactttcagctatttgattggcaattgtgaaacaaaagaagagattaa-aaagtaagttgagtttaataatttcatatat |
263 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||| || || || | |||||||||||||||||||| ||||||| |
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|
| T |
31464896 |
ctgattcacagactttcagctatttgattggcaattgtgaaacaaaagatgatataaatatggtaagttgagtttaataattccatatat |
31464985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 93 - 263
Target Start/End: Original strand, 31451723 - 31451894
Alignment:
| Q |
93 |
ttctcacttttttcgatattgtagaaaaacatcagtggtgggttgagggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttca |
192 |
Q |
| |
|
||||||| |||| ||| | |||||||| | |||||||||| |||||||| ||||| | |||| |||||||||| ||| || |||||| | ||||| |
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|
| T |
31451723 |
ttctcaccttttccgaaagtgtagaaaggcctcagtggtggattgagggtcatcaaaaacatgcaagatgccaacgtaatgcctgattcacagacttttc |
31451822 |
T |
|
| Q |
193 |
gctatttgattggcaattgtgaaacaaaagaagagattaaaaag-taagttgagtttaataatttcatatat |
263 |
Q |
| |
|
|||||||| |||||| |||||||||| |||| || || || ||| ||||||||||| ||||||| ||||||| |
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|
| T |
31451823 |
gctatttggttggcatttgtgaaacagaagacgatataaataaggtaagttgagttgaataattccatatat |
31451894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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