View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0713_low_19 (Length: 384)
Name: NF0713_low_19
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 28731454 - 28731173
Alignment:
| Q |
1 |
tttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgttccaggtatattcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28731454 |
tttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtatattcacc |
28731355 |
T |
|
| Q |
101 |
atcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcgattcatccgaacagca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28731354 |
atcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaactgtcacttccgagtcgattcatccgaacagca |
28731255 |
T |
|
| Q |
201 |
cttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgt |
282 |
Q |
| |
|
||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28731254 |
cttccggcggtgctccaaaagtattcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgt |
28731173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 38121880 - 38121599
Alignment:
| Q |
1 |
tttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgttccaggtatattcacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
38121880 |
tttcaccattttcgctccctctgatgcatcgcttcgcacttgcttttcttgctctgttccgaatctccttcgtgaacacatagttccaggtatattcacc |
38121781 |
T |
|
| Q |
101 |
atcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcgattcatccgaacagca |
200 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||||| ||||| || |
|
|
| T |
38121780 |
atcgaatatcttcggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttccgagtcgattcatcagaacaaca |
38121681 |
T |
|
| Q |
201 |
cttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgt |
282 |
Q |
| |
|
||||| || ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38121680 |
cttccggcagtgctccaaaagtcttcatcggaggcgttgagattactcaaccggatctattcaacaacggaatggttgttgt |
38121599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 5 - 282
Target Start/End: Original strand, 38608247 - 38608524
Alignment:
| Q |
5 |
accattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgttccaggtatattcaccatcg |
104 |
Q |
| |
|
||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
38608247 |
accattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtttattcactatcg |
38608346 |
T |
|
| Q |
105 |
aatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcgattcatccgaacagcacttc |
204 |
Q |
| |
|
| ||| | || ||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||| |||||| ||| | |
|
|
| T |
38608347 |
agtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaacattactac |
38608446 |
T |
|
| Q |
205 |
cagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgt |
282 |
Q |
| |
|
| |||||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38608447 |
cggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgt |
38608524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 5 - 282
Target Start/End: Original strand, 38793030 - 38793307
Alignment:
| Q |
5 |
accattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgttccaggtatattcaccatcg |
104 |
Q |
| |
|
||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
38793030 |
accattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtttattcactatcg |
38793129 |
T |
|
| Q |
105 |
aatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcgattcatccgaacagcacttc |
204 |
Q |
| |
|
| ||| | || ||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||| |||||| ||| | |
|
|
| T |
38793130 |
agtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcgaacattactac |
38793229 |
T |
|
| Q |
205 |
cagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgt |
282 |
Q |
| |
|
| |||||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38793230 |
cggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgt |
38793307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 31529408 - 31529204
Alignment:
| Q |
1 |
tttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgttccaggtatattcacc |
100 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| | |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31529408 |
tttcactattttcgctccctctgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtatattcacc |
31529309 |
T |
|
| Q |
101 |
atcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcgattcatccgaacagca |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
31529308 |
atcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttccgagtcgattcatccgaacaaca |
31529209 |
T |
|
| Q |
201 |
cttcc |
205 |
Q |
| |
|
||||| |
|
|
| T |
31529208 |
cttcc |
31529204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 51801476 - 51801272
Alignment:
| Q |
1 |
tttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgttccaggtatattcacc |
100 |
Q |
| |
|
|||||| |||||||||||||||||| | ||| | | |||||| |||||||||| |||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
51801476 |
tttcactattttcgctccctctgatacttcgcttcacacttgcttttcttgctgtgttccgaatctcctccgtgaacacatcgttccagatatattcacc |
51801377 |
T |
|
| Q |
101 |
atcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcgattcatccgaacagca |
200 |
Q |
| |
|
||| |||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||| |||||||||||| |||||||||||||||| || |
|
|
| T |
51801376 |
atcaaatacctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaatcgtcacttccgattcgattcatccgaacaaca |
51801277 |
T |
|
| Q |
201 |
cttcc |
205 |
Q |
| |
|
||||| |
|
|
| T |
51801276 |
cttcc |
51801272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 34875812 - 34876015
Alignment:
| Q |
1 |
tttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgttccaggtatattcacc |
100 |
Q |
| |
|
|||||| ||||| ||||||| |||||| ||| | | |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34875812 |
tttcactatttttgctccctttgatgcttcgcttcacacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtatattcacc |
34875911 |
T |
|
| Q |
101 |
atcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcgattcatccgaacagca |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||||||||||||| || |
|
|
| T |
34875912 |
atcgaatatctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaaccatcacttccgagtcgattcatccgaacaaca |
34876011 |
T |
|
| Q |
201 |
cttc |
204 |
Q |
| |
|
|||| |
|
|
| T |
34876012 |
cttc |
34876015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University