View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0713_low_2 (Length: 651)

Name: NF0713_low_2
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0713_low_2
NF0713_low_2
[»] chr3 (1 HSPs)
chr3 (90-651)||(42062879-42063440)
[»] chr1 (1 HSPs)
chr1 (94-275)||(9514335-9514516)


Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 90 - 651
Target Start/End: Complemental strand, 42063440 - 42062879
Alignment:
Q  90 tcatcatcagccagtggatttccaaaatttgatctcatgttgcttggcatgggtcctgatgggcatgtagcttctctgttcccaggtcaccctcttgtcc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42063440 tcatcatcagccagtggatttccaaaatttgatctcatgttgcttggcatgggtcctgatgggcatgtagcttctctgttcccaggtcaccctcttgtcc 42063341  T
Q  190 atgagaataaaaaatgggtcacctcaattaacgactcgccaaaaccacccccagagagaataacatttacctttcccgtgatcaattcctctgcttacat 289  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42063340 atgagaataaaaaatgggttacctcaattaacgactcgccaaaaccacccccagagagaataacatttacctttcccgtgatcaattcctctgcttacat 42063241  T
Q  290 tgctcttgtggtgactggtaccggtaaagcggatgcagttcactctgcactacgcggatctgaaacatcggaaaagcttcctgctgcattggtttcacct 389  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42063240 tgctcttgtggtgactggtaccggcaaagcggatgcagttcactctgcactacgcggatctgaaacatctgaaaagcttcctgctgcattggtttcacct 42063141  T
Q  390 gaaggggagttgaaatggttcttggacaaaggtgcagcgtcaaagctgtagatcctaaagctaagccagttaatctatgtgttgtgctcgtgtttatttt 489  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42063140 gaaggggagttgaaatggttcttggacaaaggtgctgcgtcaaagctgtagatcctgaagctaagccagttaatctatgtgttgtgctcgtgtttatttt 42063041  T
Q  490 ggcaataatgagtttgtgtaatggatcacataactagtactgattctccatatctcagtgatagttggcactggagagggatctttgcagcaataagagg 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  42063040 ggcaataatgagtttgtgtaatggatcacataactagtactgattctccatatctcagtgatagttgacactggagagggatctttgtagcaataagagg 42062941  T
Q  590 ataaagtgaagaaagagtgcaatgcgaagttcttttggttcaaagtctaaaatttcccttga 651  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  42062940 ataaagtgaagaaagagtgcaaggcaaagttcttttggttcaaagtctaaaatttcccttga 42062879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 94 - 275
Target Start/End: Complemental strand, 9514516 - 9514335
Alignment:
Q  94 catcagccagtggatttccaaaatttgatctcatgttgcttggcatgggtcctgatgggcatgtagcttctctgttcccaggtcaccctcttgtccatga 193  Q
    ||||| ||| |||||| |||||||||||||||||| | || || |||||||| ||||| ||||| || ||| | |||||||||||  ||||| |||| ||    
T  9514516 catcaaccaatggattaccaaaatttgatctcatgctcctaggtatgggtccggatggacatgttgcatctttattcccaggtcatgctcttctccaaga 9514417  T
Q  194 gaataaaaaatgggtcacctcaattaacgactcgccaaaaccacccccagagagaataacatttacctttcccgtgatcaat 275  Q
    | || | |||||||| || |   | |  ||||| |||||||||||  |||||||||| || || || ||||| |||||||||    
T  9514416 ggatcagaaatgggttactttcctcactgactcaccaaaaccaccatcagagagaattactttcacttttccagtgatcaat 9514335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University