View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0713_low_2 (Length: 651)
Name: NF0713_low_2
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0713_low_2 |
 |  |
|
[»] chr3 (1 HSPs) |
 |  |
|
Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 90 - 651
Target Start/End: Complemental strand, 42063440 - 42062879
Alignment:
Q |
90 |
tcatcatcagccagtggatttccaaaatttgatctcatgttgcttggcatgggtcctgatgggcatgtagcttctctgttcccaggtcaccctcttgtcc |
189 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
42063440 |
tcatcatcagccagtggatttccaaaatttgatctcatgttgcttggcatgggtcctgatgggcatgtagcttctctgttcccaggtcaccctcttgtcc |
42063341 |
T |
 |
Q |
190 |
atgagaataaaaaatgggtcacctcaattaacgactcgccaaaaccacccccagagagaataacatttacctttcccgtgatcaattcctctgcttacat |
289 |
Q |
|
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
42063340 |
atgagaataaaaaatgggttacctcaattaacgactcgccaaaaccacccccagagagaataacatttacctttcccgtgatcaattcctctgcttacat |
42063241 |
T |
 |
Q |
290 |
tgctcttgtggtgactggtaccggtaaagcggatgcagttcactctgcactacgcggatctgaaacatcggaaaagcttcctgctgcattggtttcacct |
389 |
Q |
|
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
T |
42063240 |
tgctcttgtggtgactggtaccggcaaagcggatgcagttcactctgcactacgcggatctgaaacatctgaaaagcttcctgctgcattggtttcacct |
42063141 |
T |
 |
Q |
390 |
gaaggggagttgaaatggttcttggacaaaggtgcagcgtcaaagctgtagatcctaaagctaagccagttaatctatgtgttgtgctcgtgtttatttt |
489 |
Q |
|
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
42063140 |
gaaggggagttgaaatggttcttggacaaaggtgctgcgtcaaagctgtagatcctgaagctaagccagttaatctatgtgttgtgctcgtgtttatttt |
42063041 |
T |
 |
Q |
490 |
ggcaataatgagtttgtgtaatggatcacataactagtactgattctccatatctcagtgatagttggcactggagagggatctttgcagcaataagagg |
589 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
T |
42063040 |
ggcaataatgagtttgtgtaatggatcacataactagtactgattctccatatctcagtgatagttgacactggagagggatctttgtagcaataagagg |
42062941 |
T |
 |
Q |
590 |
ataaagtgaagaaagagtgcaatgcgaagttcttttggttcaaagtctaaaatttcccttga |
651 |
Q |
|
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
T |
42062940 |
ataaagtgaagaaagagtgcaaggcaaagttcttttggttcaaagtctaaaatttcccttga |
42062879 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 94 - 275
Target Start/End: Complemental strand, 9514516 - 9514335
Alignment:
Q |
94 |
catcagccagtggatttccaaaatttgatctcatgttgcttggcatgggtcctgatgggcatgtagcttctctgttcccaggtcaccctcttgtccatga |
193 |
Q |
|
|
||||| ||| |||||| |||||||||||||||||| | || || |||||||| ||||| ||||| || ||| | ||||||||||| ||||| |||| || |
|
|
T |
9514516 |
catcaaccaatggattaccaaaatttgatctcatgctcctaggtatgggtccggatggacatgttgcatctttattcccaggtcatgctcttctccaaga |
9514417 |
T |
 |
Q |
194 |
gaataaaaaatgggtcacctcaattaacgactcgccaaaaccacccccagagagaataacatttacctttcccgtgatcaat |
275 |
Q |
|
|
| || | |||||||| || | | | ||||| ||||||||||| |||||||||| || || || ||||| ||||||||| |
|
|
T |
9514416 |
ggatcagaaatgggttactttcctcactgactcaccaaaaccaccatcagagagaattactttcacttttccagtgatcaat |
9514335 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University