View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713_low_20 (Length: 364)
Name: NF0713_low_20
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_20 |
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| [»] chr8 (10 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 134 - 364
Target Start/End: Original strand, 6322197 - 6322427
Alignment:
| Q |
134 |
acatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgaaactttgagaagctgatttgagtatgtaaa |
233 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6322197 |
acatcatcaaagctattaaattctggcttattgagttgtaatgtaattgcagattgtaattgaggtatgaaactttgagaagctgatttgagtatgtaaa |
6322296 |
T |
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| Q |
234 |
caagaaaatctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaacaaagtcgtcccgtctcacacttttaggatctgttcacatacaaaa |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6322297 |
caagaaaatctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaacaaagtcgtcccgtctctcacttttaggatctgttcacatacaaaa |
6322396 |
T |
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| Q |
334 |
ttgaagacacgcattagcaagtattagcaaa |
364 |
Q |
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| T |
6322397 |
ttgaagacacgcattagcaagtactagcaaa |
6322427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 134 - 333
Target Start/End: Original strand, 6275330 - 6275529
Alignment:
| Q |
134 |
acatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgaaactttgagaagctgatttgagtatgtaaa |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||| |
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| T |
6275330 |
acatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgacattttgagatactgatttgagtatgtaaa |
6275429 |
T |
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| Q |
234 |
caagaaaatctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaacaaagtcgtcccgtctcacacttttaggatctgttcacatacaaaa |
333 |
Q |
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| T |
6275430 |
caagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtctctcacttttaggatctgcacaaatacaaaa |
6275529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 132 - 313
Target Start/End: Original strand, 6332779 - 6332960
Alignment:
| Q |
132 |
ggacatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgaaactttgagaagctgatttgagtatgta |
231 |
Q |
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||||||| ||||| ||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||| | | ||||||| |||||||| ||||| || |
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| T |
6332779 |
ggacatcttcaaaagtgttaaactctggctgattgaattgtaatgtaagtgcagatcgtaattgaggtataacattttgagatgctgatttcagtatata |
6332878 |
T |
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| Q |
232 |
aacaagaaaatctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaacaaagtcgtcccgtctcacactttta |
313 |
Q |
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| T |
6332879 |
aacaagaaagtctgaagacttcaagtggccaaatgattcatctcttggaatgtaaacaaagtcgctccgactctcactttta |
6332960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 199 - 334
Target Start/End: Original strand, 6289818 - 6289953
Alignment:
| Q |
199 |
tatgaaactttgagaagctgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaacaaagtcgtcc |
298 |
Q |
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||||||| |||||| |||||||| |||| || | ||||||| |||||||||||| |||| |||||| |||||||||||||| |||||||||| ||| | |
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| T |
6289818 |
tatgaaatcttgagatgctgatttcagtaggttatcaagaaattctgaagacttcttgtgatcaaatgattcatctcttggaatgtaaacaaagccgttc |
6289917 |
T |
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| Q |
299 |
cgtctcacacttttaggatctgttcacatacaaaat |
334 |
Q |
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|| ||| ||||||||||||||||||| |||||||| |
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| T |
6289918 |
cgactctcacttttaggatctgttcatgtacaaaat |
6289953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 142 - 289
Target Start/End: Original strand, 6353181 - 6353328
Alignment:
| Q |
142 |
aaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgaaactttgagaagctgatttgagtatgtaaacaagaaaa |
241 |
Q |
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|||| ||||||| || || ||||||| ||||||||||| | ||||| | ||||||||||| | ||||||| |||||||||||||||||||||||||| |
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| T |
6353181 |
aaaggtgttaaactcagggttattgagttgtaatgtaactacagatctcagttgaggtatgacattttgagatgctgatttgagtatgtaaacaagaaag |
6353280 |
T |
|
| Q |
242 |
tctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaaca |
289 |
Q |
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||||| ||||| ||| ||||| | |||||||||||||| ||||||| |
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| T |
6353281 |
tctgatgactttgtgtgtccaaaagattcatctcttggaaggtaaaca |
6353328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 326
Target Start/End: Original strand, 6363969 - 6364161
Alignment:
| Q |
134 |
acatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgaaactttgagaagctgatttgagtatgtaaa |
233 |
Q |
| |
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||||| |||||| ||||||| || |||| || |||||||||||||| | |||| |||| ||||||||| | ||||||| || ||||||||||||| || |
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| T |
6363969 |
acatcttcaaaggtgttaaactcaggctcatggaattgtaatgtaactatagatcttaatcgaggtatgacattttgagatgcagatttgagtatgtgaa |
6364068 |
T |
|
| Q |
234 |
caagaaaatctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaacaaagtcgtcccgtctcacacttttaggatctgttcaca |
326 |
Q |
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||||||| ||||| ||||| ||| ||||||| |||||||||||| | ||||||| ||| || ||| |||| |||||||||||||||| |
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| T |
6364069 |
caagaaagtctgatgactttgtgtgtccaaatgattcatctcttgggaggtaaacagtgtcacttcgactctcactcttaggatctgttcaca |
6364161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 289
Target Start/End: Original strand, 6424909 - 6425002
Alignment:
| Q |
196 |
aggtatgaaactttgagaagctgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaaca |
289 |
Q |
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|||||||| | ||||||| ||||||||||||||| || ||||||| ||||||||||| ||| |||||||| ||||||||||||| ||||||| |
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| T |
6424909 |
aggtatgatattttgagatgctgatttgagtatgaaagcaagaaagtctgaagactttgtgtgtccaaatgcctcatctcttggaaggtaaaca |
6425002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 7460152 - 7460224
Alignment:
| Q |
215 |
gctgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaa |
287 |
Q |
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||||||||||||| ||| ||||||| || || ||||||||||||||||||| |||||||||||||||||||| |
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| T |
7460152 |
gctgatttgagtacataaccaagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaacgtaaa |
7460224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 7471728 - 7471800
Alignment:
| Q |
215 |
gctgatttgagtatgtaaacaagaaaatctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaa |
287 |
Q |
| |
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||||||||||||| ||| ||||||| || || ||||||||||||||||||| |||||||||||||||||||| |
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| T |
7471728 |
gctgatttgagtacataaccaagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaacgtaaa |
7471800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 6451892 - 6451944
Alignment:
| Q |
235 |
aagaaaatctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaa |
287 |
Q |
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|||||| ||||| ||||||||||||||||| ||||||||||||||| |||| |
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| T |
6451892 |
aagaaagtctgatgacttcaagtgaccaaaattttcatctcttggaacataaa |
6451944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 322
Target Start/End: Original strand, 42694074 - 42694161
Alignment:
| Q |
235 |
aagaaaatctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaacaaagtcgtcccgtctcacacttttaggatctgtt |
322 |
Q |
| |
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|||||||||||| || |||||||||||||| |||||||||||||||| || ||||| || || ||| ||||||||||||||||| |
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| T |
42694074 |
aagaaaatctgatgatttcaagtgaccaaaagcttcatctcttggaagatacacaaaatcactcctactctcacttttaggatctgtt |
42694161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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