View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0713_low_30 (Length: 322)

Name: NF0713_low_30
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0713_low_30
NF0713_low_30
[»] chr8 (1 HSPs)
chr8 (100-322)||(6133077-6133302)
[»] chr2 (1 HSPs)
chr2 (99-320)||(26379939-26380160)
[»] chr1 (1 HSPs)
chr1 (123-317)||(5044340-5044535)
[»] chr5 (1 HSPs)
chr5 (201-311)||(20004433-20004544)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 100 - 322
Target Start/End: Original strand, 6133077 - 6133302
Alignment:
Q  100 acacacacttggatcgggatctaagttttggaatcattggagacactcaagaaggtaaagggtcaaagtagagtcaaagctcttaaagatcttagaaaaa 199  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6133077 acacacacttggattgggatctaagttttggaatcattggagacactcaagaaggtaaagggtcaaagtagagtcaaagctcttaaaaatcttagaaaaa 6133176  T
Q  200 ttgttgttactcatgtttttgctggaaaacagggttgaaaaatggtggggttggtttggtttgttctttgttaggtccttttacttcaca---tgttgtt 296  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   |||||||    
T  6133177 ttgttgttgctcatgtttgtgctggaaaacagtgttgaaaaatggtggggttggtttggtttgttctctgttaggtccttttacttcacatgttgttgtt 6133276  T
Q  297 ggctgtgaagctattggtatccttct 322  Q
    || |||||||||||||||||||||||    
T  6133277 ggttgtgaagctattggtatccttct 6133302  T

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Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 99 - 320
Target Start/End: Complemental strand, 26380160 - 26379939
Alignment:
Q  99 cacacacacttggatcgggatctaagttttggaatcattggagacactcaagaaggtaaagggtcaaagtagagtcaaagctcttaaagatcttagaaaa 198  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26380160 cacacacactttgatcgggatctaagttttggaatcattggagacactcaagaaggtaaagggtcaaagtagaggcaaagctcttaaagatcttagaaaa 26380061  T
Q  199 attgttgttactcatgtttttgctggaaaacagggttgaaaaatggtggggttggtttggtttgttctttgttaggtccttttacttcacatgttgttgg 298  Q
     |||||||| ||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  26380060 cttgttgttgctcatgtttgtgctggaaaatagtgttgaaaaatggtggggttggtttggtttgttctttgttaggtcattttacttcacatgttgttga 26379961  T
Q  299 ctgtgaagctattggtatcctt 320  Q
     |||||||||||||||||||||    
T  26379960 ttgtgaagctattggtatcctt 26379939  T

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Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 123 - 317
Target Start/End: Original strand, 5044340 - 5044535
Alignment:
Q  123 agttttggaatcattggagacactcaagaaggtaaagggtcaaagtagagtcaaagctcttaaagatcttagaaaaattgttgttactcatgtttttgct 222  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| ||||    
T  5044340 agttttggaaacattggagacactcaagaaggtaaagggtcaaagtagagtcaaagctcttaaggatcttagaaaacttgttgtttctcatgtttgtgct 5044439  T
Q  223 -ggaaaacagggttgaaaaatggtggggttggtttggtttgttctttgttaggtccttttacttcacatgttgttggctgtgaagctattggtatc 317  Q
     ||||||||  |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  5044440 aggaaaacattgttggaaaatggtggggttggtttggtttgttctttgttaggttcttttacttcacatgttgttggttgtgaagctattggtatc 5044535  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 20004544 - 20004433
Alignment:
Q  201 tgttgttactcatgtttttgct-ggaaaacagggttgaaaaatggtggggttggtttggtttgttctttgttaggtccttttacttcacatgttgttggc 299  Q
    ||||||| ||||||||||| |  |||| |||| |||| |||||||||| ||||  ||||||| |||| | ||||||||||||||||  ||||||| |||     
T  20004544 tgttgttgctcatgttttttcaaggaagacagtgttggaaaatggtggagttgcattggtttcttctatattaggtccttttacttaccatgttgctggg 20004445  T
Q  300 tgtgaagctatt 311  Q
    |||||| |||||    
T  20004444 tgtgaaactatt 20004433  T

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