View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0713_low_31 (Length: 319)

Name: NF0713_low_31
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0713_low_31
NF0713_low_31
[»] chr6 (2 HSPs)
chr6 (30-309)||(14752073-14752346)
chr6 (177-309)||(27136396-27136528)
[»] chr8 (2 HSPs)
chr8 (185-309)||(15030609-15030732)
chr8 (64-101)||(27713516-27713553)
[»] chr2 (2 HSPs)
chr2 (224-308)||(42797115-42797200)
chr2 (121-172)||(8520865-8520916)
[»] scaffold0408 (1 HSPs)
scaffold0408 (30-125)||(1722-1810)
[»] chr3 (2 HSPs)
chr3 (121-167)||(18732964-18733010)
chr3 (123-167)||(27335990-27336034)
[»] chr5 (2 HSPs)
chr5 (123-167)||(38093778-38093822)
chr5 (135-169)||(13008376-13008410)
[»] chr4 (3 HSPs)
chr4 (125-167)||(17798665-17798707)
chr4 (123-173)||(24994558-24994608)
chr4 (122-167)||(49282513-49282558)
[»] chr1 (2 HSPs)
chr1 (121-155)||(3734659-3734693)
chr1 (133-166)||(2660336-2660369)
[»] chr7 (2 HSPs)
chr7 (123-167)||(23144622-23144666)
chr7 (115-167)||(28007087-28007139)


Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 14752346 - 14752073
Alignment:
Q  30 gtatgtattgaagttgttatgatttttgctgtgggtgttccgcctgtatacgacgtctttgttttgtagtttttgtttgatagtacatgtccgtcttgtg 129  Q
    ||||||||||||||||||||| ||||| |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14752346 gtatgtattgaagttgttatggtttttcctgtgggtgtt--------atacgacgtctttgttttgtagtttttgtttgatagtacatgtccgtcttgtg 14752255  T
Q  130 cagggacttgattattaataaattttactgttaaaaaat-aaaataaacccctccttaccctcctcattcttcaatgtagcgacggtcatgggtggtgtg 228  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14752254 cagggacttgattattaataaatttgactgttaaaaaataaaaataaacccctccctaccctcctcattcttcaatgtagcgacggtcatgggtggtgtg 14752155  T
Q  229 acggttggcagtagcgtccagcaccacctcc-tttcctgaatctgccggaggtttcactgctggcctggtcggtggtctctg 309  Q
    ||||||||||||||| |||||||| |||||| |||||||||||||||| || ||||||||||||||||||||||||||||||    
T  14752154 acggttggcagtagcatccagcacgacctccttttcctgaatctgccgtagatttcactgctggcctggtcggtggtctctg 14752073  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 177 - 309
Target Start/End: Complemental strand, 27136528 - 27136396
Alignment:
Q  177 cccctccttaccctcctcattcttcaatgtagcgacggtcatgggtggtgtgacggttggcagtagcgtccagcaccacctcctttcctgaatctgccgg 276  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| |   ||| ||||| ||||| ||||||| || |    
T  27136528 cccctccctaccctcctcatccttcaatgtagcgacggtcgtgggtggtgtgatggttggcagtagccttttgcatcaccttctttcttgaatcttccag 27136429  T
Q  277 aggtttcactgctggcctggtcggtggtctctg 309  Q
    | ||||||||| ||| ||||||| |||||||||    
T  27136428 aagtttcactgttggtctggtcgatggtctctg 27136396  T

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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 15030609 - 15030732
Alignment:
Q  185 taccctcctcattcttcaatgtagcgacggtcatgggtggtgtgacggttggcagtagcgtccagcaccacctcctttcctgaatctgccggaggtttca 284  Q
    |||||||||||| ||||||||||||||||| |||| ||||||| ||||||||||||||| ||| ||||||||| ||||| |||||||||| ||||||  |    
T  15030609 taccctcctcatccttcaatgtagcgacggccatgtgtggtgttacggttggcagtagcctcc-gcaccaccttctttcttgaatctgccagaggttcta 15030707  T
Q  285 ctgctggcctggtcggtggtctctg 309  Q
    |||||||||||||||||||||||||    
T  15030708 ctgctggcctggtcggtggtctctg 15030732  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 27713553 - 27713516
Alignment:
Q  64 gtgttccgcctgtatacgacgtctttgttttgtagttt 101  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  27713553 gtgttccgcctatatacgacgtctttgttttgtagttt 27713516  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 42797200 - 42797115
Alignment:
Q  224 gtgtgacggttggcagta-gcgtccagcaccacctcctttcctgaatctgccggaggtttcactgctggcctggtcggtggtctct 308  Q
    |||||| ||||||||||| || |||  ||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  42797200 gtgtgatggttggcagtaagcctccctcaccacctcatttcctgaatctgccggagatttcactgttggcctggtcggtggtctct 42797115  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 8520865 - 8520916
Alignment:
Q  121 cgtcttgtgcagggacttgattattaataaattttactgttaaaaaataaaa 172  Q
    ||||||||| ||||||||| |||||||||| |||| ||||||||||||||||    
T  8520865 cgtcttgtggagggacttggttattaataagttttgctgttaaaaaataaaa 8520916  T

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Target: scaffold0408 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 1722 - 1810
Alignment:
Q  30 gtatgtattgaagttgttatgatttttgctgtgggtgttccgcctgtatacgacgtctttgttttgt-agtttttgtttgatagtacatgtccgtct 125  Q
    ||||||||||||||||||||   |||| |||||||||||        |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1722 gtatgtattgaagttgttattggttttcctgtgggtgtt--------atacgacgtctttgttttgttagtttttgtttgatagtacatgtccgtct 1810  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 18733010 - 18732964
Alignment:
Q  121 cgtcttgtgcagggacttgattattaataaattttactgttaaaaaa 167  Q
    |||||||| |||||||||| ||||||||||||||| |||||||||||    
T  18733010 cgtcttgtacagggacttggttattaataaattttgctgttaaaaaa 18732964  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 27335990 - 27336034
Alignment:
Q  123 tcttgtgcagggacttgattattaataaattttactgttaaaaaa 167  Q
    |||||| | |||||||| ||||||||||||||| |||||||||||    
T  27335990 tcttgtacggggacttggttattaataaattttgctgttaaaaaa 27336034  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 38093778 - 38093822
Alignment:
Q  123 tcttgtgcagggacttgattattaataaattttactgttaaaaaa 167  Q
    |||| |||||||||||||||||||||||||||| | |||||||||    
T  38093778 tcttatgcagggacttgattattaataaattttgccgttaaaaaa 38093822  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 13008410 - 13008376
Alignment:
Q  135 acttgattattaataaattttactgttaaaaaata 169  Q
    |||||||||||||||||||||| ||||||||||||    
T  13008410 acttgattattaataaattttattgttaaaaaata 13008376  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 167
Target Start/End: Original strand, 17798665 - 17798707
Alignment:
Q  125 ttgtgcagggacttgattattaataaattttactgttaaaaaa 167  Q
    ||||||||| ||||||||||||||||||||| | |||||||||    
T  17798665 ttgtgcaggaacttgattattaataaattttgccgttaaaaaa 17798707  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 24994558 - 24994608
Alignment:
Q  123 tcttgtgcagggacttgattattaataaattttactgttaaaaaataaaat 173  Q
    |||| ||||| || || |||||||||||||||||||||||||||| |||||    
T  24994558 tcttctgcagagatttaattattaataaattttactgttaaaaaaaaaaat 24994608  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 49282513 - 49282558
Alignment:
Q  122 gtcttgtgcagggacttgattattaataaattttactgttaaaaaa 167  Q
    ||||||||||| |||||| ||||||||||||||| | |||||||||    
T  49282513 gtcttgtgcagagacttgtttattaataaattttgccgttaaaaaa 49282558  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 3734693 - 3734659
Alignment:
Q  121 cgtcttgtgcagggacttgattattaataaatttt 155  Q
    |||||||||||| ||||||||||||||||||||||    
T  3734693 cgtcttgtgcagagacttgattattaataaatttt 3734659  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 2660369 - 2660336
Alignment:
Q  133 ggacttgattattaataaattttactgttaaaaa 166  Q
    ||||||||||||||||||||||||| ||||||||    
T  2660369 ggacttgattattaataaattttaccgttaaaaa 2660336  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 23144622 - 23144666
Alignment:
Q  123 tcttgtgcagggacttgattattaataaattttactgttaaaaaa 167  Q
    ||||| |||| ||||||||||||||||||||||  ||||||||||    
T  23144622 tcttgcgcagagacttgattattaataaattttgttgttaaaaaa 23144666  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 28007087 - 28007139
Alignment:
Q  115 catgtccgtcttgtgcagggacttgattattaataaattttactgttaaaaaa 167  Q
    ||||| |||||||||||  ||||| ||||||||||||||||||  ||||||||    
T  28007087 catgttcgtcttgtgcatagacttaattattaataaattttaccattaaaaaa 28007139  T

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