View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0713_low_35 (Length: 314)
Name: NF0713_low_35
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_35 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 89 - 314
Target Start/End: Original strand, 29606954 - 29607191
Alignment:
| Q |
89 |
atcatcacccgttccttccccagcaattctcccaccatcacctgcaccaacacctgcaatagacacacca------------gtaccatcgcctgaagat |
176 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
29606954 |
atcatcacctgttccttccccagcaattctcccaccatcacctgcaccaacacctgcaatagacacaccatcatcagcaccagcaccatcgcctgaagat |
29607053 |
T |
|
| Q |
177 |
gatgcgccagaaccaccgccaccccacaagcactagagaagaaaacacaagcctagtaagcacaagaaacatcacgcactagccctagcaccagagccta |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29607054 |
gatgcgccagaaccaccgccaccccacaagcacaagagaagaaaacacaagcatagtaagcataagaaacatcacgcactagctctagcaccagagccta |
29607153 |
T |
|
| Q |
277 |
cacgttcaacttcaacaatcattaggagcagtccccca |
314 |
Q |
| |
|
|| |||||| |||||||||||||||||| ||||||||| |
|
|
| T |
29607154 |
caagttcaagttcaacaatcattaggaggagtccccca |
29607191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University