View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713_low_37 (Length: 312)
Name: NF0713_low_37
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 42529537 - 42529436
Alignment:
| Q |
44 |
caaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtattcaatacttgttgatctgtatttccaagaactgagattccc |
143 |
Q |
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| T |
42529537 |
caaaagaatctgactgaaaaagatcaaaaccggcatccggcttggccctccttgtgtattcaatacttgttgatctgtatttccaagaactgagattccc |
42529438 |
T |
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| Q |
144 |
at |
145 |
Q |
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|| |
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| T |
42529437 |
at |
42529436 |
T |
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Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 42535259 - 42535179
Alignment:
| Q |
44 |
caaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtattcaatacttgttgatctgtatt |
124 |
Q |
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| T |
42535259 |
caaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtcttcaatgcgtgttgatctgtatt |
42535179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 42535149 - 42535104
Alignment:
| Q |
163 |
gtaataaggcagtcattgttcttgttgtagaagaggctcttgatga |
208 |
Q |
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| T |
42535149 |
gtaataagtgagtcattgttcttgttgtagaagagtctcctgatga |
42535104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 27821993 - 27821896
Alignment:
| Q |
103 |
tcaatacttgttgatctgtatttccaagaactgagattcccatgaccgtaatcagacagcgtaataaggcagtcattgttcttgttgtagaagaggct |
200 |
Q |
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| T |
27821993 |
tcaatccttgttgatctgcacttcaaagaactgaaattctcagaagcataaacagacactgtaataagtgagtcattgttcttgttgtagaagaggct |
27821896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 27822138 - 27822082
Alignment:
| Q |
46 |
aaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtat |
102 |
Q |
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| T |
27822138 |
aaagactcggactggaaaagaggaaaaccagcatccggcttggccctctttatgtat |
27822082 |
T |
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