View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0713_low_39 (Length: 291)

Name: NF0713_low_39
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0713_low_39
NF0713_low_39
[»] scaffold0196 (1 HSPs)
scaffold0196 (56-224)||(23801-23969)
[»] chr8 (11 HSPs)
chr8 (57-224)||(13425076-13425242)
chr8 (56-224)||(25219158-25219325)
chr8 (56-224)||(30306636-30306803)
chr8 (57-224)||(14713751-14713917)
chr8 (56-224)||(7781208-7781375)
chr8 (56-224)||(7821298-7821465)
chr8 (87-224)||(14767018-14767154)
chr8 (56-224)||(33861973-33862141)
chr8 (56-224)||(31979120-31979287)
chr8 (122-224)||(25209637-25209738)
chr8 (56-128)||(21114337-21114409)
[»] scaffold0017 (1 HSPs)
scaffold0017 (56-224)||(186018-186185)
[»] chr3 (16 HSPs)
chr3 (58-226)||(46912529-46912696)
chr3 (56-224)||(13529499-13529666)
chr3 (58-224)||(50409631-50409796)
chr3 (56-224)||(37802016-37802186)
chr3 (56-224)||(10110059-10110226)
chr3 (56-224)||(11361717-11361884)
chr3 (56-224)||(32269-32436)
chr3 (56-224)||(9999866-10000033)
chr3 (56-224)||(10231283-10231450)
chr3 (56-224)||(10234881-10235048)
chr3 (56-224)||(11368105-11368272)
chr3 (87-224)||(15329191-15329327)
chr3 (56-224)||(41763955-41764123)
chr3 (56-224)||(10038099-10038266)
chr3 (56-224)||(10969374-10969540)
chr3 (129-224)||(41221641-41221735)
[»] chr2 (14 HSPs)
chr2 (56-224)||(27191948-27192115)
chr2 (56-224)||(27841762-27841929)
chr2 (56-224)||(17684422-17684589)
chr2 (56-224)||(27508833-27509000)
chr2 (60-231)||(40488287-40488457)
chr2 (56-224)||(2867649-2867819)
chr2 (56-224)||(21394829-21394996)
chr2 (57-224)||(24245310-24245476)
chr2 (56-224)||(35609143-35609311)
chr2 (56-224)||(28666766-28666933)
chr2 (56-224)||(37825600-37825767)
chr2 (56-222)||(41920767-41920932)
chr2 (146-224)||(3642843-3642920)
chr2 (56-128)||(24269663-24269735)
[»] scaffold1139 (1 HSPs)
scaffold1139 (56-224)||(456-623)
[»] scaffold0012 (1 HSPs)
scaffold0012 (57-224)||(97418-97584)
[»] chr7 (6 HSPs)
chr7 (56-223)||(21070655-21070821)
chr7 (56-224)||(5829148-5829315)
chr7 (56-224)||(12786572-12786739)
chr7 (58-224)||(7036180-7036345)
chr7 (56-224)||(9001738-9001905)
chr7 (56-128)||(42231638-42231710)
[»] chr5 (22 HSPs)
chr5 (56-231)||(25543384-25543558)
chr5 (56-220)||(15033174-15033337)
chr5 (56-223)||(6088670-6088836)
chr5 (56-224)||(43448935-43449102)
chr5 (56-224)||(26832080-26832247)
chr5 (56-220)||(14193405-14193569)
chr5 (56-224)||(2261581-2261748)
chr5 (56-224)||(39882642-39882809)
chr5 (59-231)||(43524428-43524599)
chr5 (56-231)||(37372388-37372562)
chr5 (75-224)||(18116318-18116466)
chr5 (56-224)||(8429168-8429335)
chr5 (56-224)||(37260774-37260941)
chr5 (57-224)||(27880544-27880709)
chr5 (56-224)||(3689437-3689604)
chr5 (56-224)||(3877183-3877350)
chr5 (56-211)||(4051282-4051437)
chr5 (122-211)||(10692465-10692554)
chr5 (56-128)||(10024617-10024689)
chr5 (56-132)||(24630454-24630530)
chr5 (56-128)||(30347137-30347209)
chr5 (169-223)||(30313734-30313787)
[»] chr6 (10 HSPs)
chr6 (56-224)||(18343584-18343751)
chr6 (56-224)||(10187003-10187170)
chr6 (56-224)||(4220298-4220468)
chr6 (56-224)||(2202773-2202940)
chr6 (56-224)||(24196359-24196526)
chr6 (56-224)||(31512104-31512271)
chr6 (56-224)||(12516847-12517014)
chr6 (56-224)||(15333101-15333268)
chr6 (56-224)||(29641940-29642107)
chr6 (56-220)||(12519070-12519233)
[»] chr1 (12 HSPs)
chr1 (56-224)||(48239071-48239238)
chr1 (57-224)||(36206675-36206841)
chr1 (57-224)||(2328629-2328795)
chr1 (56-220)||(16748262-16748425)
chr1 (56-224)||(18148147-18148314)
chr1 (58-224)||(6311587-6311752)
chr1 (56-211)||(28961547-28961700)
chr1 (56-224)||(48775928-48776095)
chr1 (56-224)||(16041484-16041651)
chr1 (56-224)||(37390738-37390905)
chr1 (56-211)||(25074443-25074598)
chr1 (56-128)||(52500223-52500295)
[»] scaffold0888 (1 HSPs)
scaffold0888 (56-211)||(495-650)
[»] scaffold0262 (1 HSPs)
scaffold0262 (56-224)||(18465-18632)
[»] scaffold0022 (1 HSPs)
scaffold0022 (56-224)||(125688-125855)
[»] scaffold0003 (3 HSPs)
scaffold0003 (56-224)||(164989-165156)
scaffold0003 (56-224)||(182270-182437)
scaffold0003 (176-224)||(173104-173151)
[»] chr4 (9 HSPs)
chr4 (56-220)||(49709636-49709799)
chr4 (56-224)||(35855366-35855533)
chr4 (56-211)||(37531998-37532151)
chr4 (56-220)||(787344-787507)
chr4 (56-224)||(1860136-1860303)
chr4 (56-224)||(31920931-31921099)
chr4 (56-224)||(49787421-49787588)
chr4 (75-199)||(38517579-38517703)
chr4 (56-128)||(55559631-55559703)
[»] scaffold1424 (1 HSPs)
scaffold1424 (56-231)||(1136-1310)
[»] scaffold0029 (1 HSPs)
scaffold0029 (56-210)||(132468-132622)
[»] scaffold0002 (1 HSPs)
scaffold0002 (56-210)||(310285-310439)
[»] scaffold0134 (1 HSPs)
scaffold0134 (56-224)||(5852-6019)
[»] scaffold0090 (1 HSPs)
scaffold0090 (56-224)||(49530-49697)
[»] scaffold0073 (2 HSPs)
scaffold0073 (56-224)||(18915-19083)
scaffold0073 (56-224)||(31393-31560)
[»] scaffold0550 (2 HSPs)
scaffold0550 (56-224)||(1165-1332)
scaffold0550 (105-224)||(4168-4286)
[»] scaffold0025 (2 HSPs)
scaffold0025 (133-224)||(13947-14038)
scaffold0025 (56-139)||(16227-16311)
[»] scaffold0107 (1 HSPs)
scaffold0107 (156-224)||(34424-34491)
[»] scaffold0118 (1 HSPs)
scaffold0118 (56-128)||(29227-29299)


Alignment Details
Target: scaffold0196 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 23969 - 23801
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||     
T  23969 gtttatcttcctaagtccatgttcacgcatggacaactctatgtcactatctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaag 23870  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23869 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 23801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 13425242 - 13425076
Alignment:
Q  57 tttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaa 156  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| |    
T  13425242 tttatcttcctaagtccgtgttcacgcatggacaactctatgtcactgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaaga 13425143  T
Q  157 taataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  13425142 taataatgtttgcaaggagatcacaaatgttatgtatcgtgaagtttttca-aaaagtatgatcattg 13425076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 25219158 - 25219325
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| ||||||| |||||| || |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  25219158 gtttatcttcctaagcctgtgttcacgcatggacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaag 25219257  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25219258 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattg 25219325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 30306803 - 30306636
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| | |||||||||||| ||||||| |||||| || |||||||||| ||||  ||||||||| |||||||||| ||  ||||||||     
T  30306803 gtttatcttcctaagcctatgttcacgcatggacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcattctggatgaag 30306704  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30306703 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 30306636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 14713917 - 14713751
Alignment:
Q  57 tttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaa 156  Q
    |||||||||||||| || |||||||| ||  |||||| |||||| || ||||||||||||||| ||||||||||||||||||||| |||||| ||| | |    
T  14713917 tttatcttcctaagcccgtgttcacgtatgaacaactttatgtcgctgtctctcgagttacttctagaaaaggtttgaagctgctcatcttgaatggaga 14713818  T
Q  157 taataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||    
T  14713817 taataatgtttgcaaggagaccacgaatgttgtttatcgtgaagtttttca-aaaagtatgatcattg 14713751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 7781375 - 7781208
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||||||||||  ||||||||||| ||||||| |||||| || |||||||||| ||||  ||||||||| | |||||||| ||| ||||||||     
T  7781375 gtttatcttcctaagtctgtgttcacgcatggacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtcttaagctgctcatcctggatgaag 7781276  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7781275 ataataatgtttataaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 7781208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 7821465 - 7821298
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||||||||||  ||||||||||| ||||||| |||||| || |||||||||| ||||  ||||||||| | |||||||| ||| ||||||||     
T  7821465 gtttatcttcctaagtctgtgttcacgcatggacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtctaaagctgctcatcctggatgaag 7821366  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7821365 ataataatgtttataaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 7821298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 14767154 - 14767018
Alignment:
Q  87 gacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaataataatgtttgcaaggagaccacaaatgt 186  Q
    |||||||||||||| || ||||||||||||||| || |||||||||||||||||| || ||| ||||| |||||||||||||||||||||||||||||||    
T  14767154 gacaactctatgtcgctgtctctcgagttacttctataaaaggtttgaagctgctcattttgaatgaagataataatgtttgcaaggagaccacaaatgt 14767055  T
Q  187 tgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  14767054 tgtgtatcgtgaagtttttca-aaaagtatgttcattg 14767018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 33861973 - 33862141
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||| |||| |  ||||||||||| ||||||| |||||| || |||||||||| ||||  ||||||||| ||||| || | ||| ||||||||     
T  33861973 gtttatcttcttaagcctgtgttcacgcatggacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagttggtcatcctggatgaag 33862072  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33862073 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaaatttttcaaaaaagtatgatcattg 33862141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 31979120 - 31979287
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||| ||||||  |||||||||||  |||||| ||| ||  | |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  31979120 gtttatcttcttaagtctgtgttcacgcatgaacaactttatttcggtgtctctcgagtaacttgaagaaaaggtctgaagctgctcatcctggatgaag 31979219  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  31979220 ataataatgttagtaaggagaccacaaatgttgtgtatcgtgaagtttttc-aaaaagtacgatcattg 31979287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 25209637 - 25209738
Alignment:
Q  122 agaaaaggtttgaagctgctaatcttggatgaaaataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatca 221  Q
    ||||||||| | |||||||| ||| ||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25209637 agaaaaggtcttaagctgcttatcctggataaagataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttc-aaaaagtatgatca 25209735  T
Q  222 ttg 224  Q
    |||    
T  25209736 ttg 25209738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 21114337 - 21114409
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaag 128  Q
    |||||||||||||||||  |||||||||||   |||||||||||| || ||||||||||||||| ||||||||    
T  21114337 gtttatcttcctaagtctgtgttcacgcatgagcaactctatgtcgctgtctctcgagttacttctagaaaag 21114409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 186185 - 186018
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||| |||||| || ||||||||||| | |||||||||||| || ||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  186185 gtttatctacctaagcccgtgttcacgcatgggcaactctatgtcgctgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaaa 186086  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  186085 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 186018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 58 - 226
Target Start/End: Complemental strand, 46912696 - 46912529
Alignment:
Q  58 ttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaat 157  Q
    ||||||||||||| || ||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| |||||||||||| ||    
T  46912696 ttatcttcctaagcccgtgttcacgcatggacaactctatgtcattgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaagat 46912597  T
Q  158 aataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattgat 226  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46912596 aataatgtttacaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattgat 46912529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 13529666 - 13529499
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || |||||| |||| |||||||||||||| || |||||| |||||||| ||||||||||||||||||||| ||||||||||||     
T  13529666 gtttatcttcctaagcccgtgttcatgcatggacaactctatgtcgctgtctctcaagttacttctagaaaaggtttgaagctgctcatcttggatgaag 13529567  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| |||||||||||    
T  13529566 ataataatgtttgcaacgagaccacaaatattgtgtatcgtgaagtatttcaaaaaa-tatgatcattg 13529499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 50409796 - 50409631
Alignment:
Q  58 ttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaat 157  Q
    ||||||||||||| || ||||||||||| ||||||||||||||  | ||  ||||||||||| ||||||||||||||||||||| ||||||||| || ||    
T  50409796 ttatcttcctaagcccgtgttcacgcatggacaactctatgtcgttgtcaatcgagttacttctagaaaaggtttgaagctgctcatcttggataaatat 50409697  T
Q  158 aataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  50409696 aataatgtttgcaaggagaccacaaatgttgtgtattgtgaagtttttca-aaaagtatgatcattg 50409631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 37802016 - 37802186
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaa- 154  Q
    ||||||||||||||| || ||||||||||| |||||||||||||| || ||||||||||||||  || |||||||||||||||||| ||||||||||||     
T  37802016 gtttatcttcctaagcccgtgttcacgcatggacaactctatgtcgctgtctctcgagttactcctataaaaggtttgaagctgctcatcttggatgaag 37802115  T
Q  155 --aataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
      |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  37802116 ataataataatgtttgcaagtagaccataaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattg 37802186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 10110226 - 10110059
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || |||||||||||   ||||||||||||  | ||||||||||||||| ||||||||||||||| ||||| ||||||||||||     
T  10110226 gtttatcttcctaagcccgtgttcacgcatgagcaactctatgtcgttgtctctcgagttacttctagaaaaggtttgaaactgctcatcttggatgaag 10110127  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  10110126 ataataatgttttcaaggagaccacaaatgttgtgtatcgtgaagttttt-taaaaagtatgatcattg 10110059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 11361884 - 11361717
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| | |||||||||||| | ||||| |||||| || |||||||||| ||||  |||||||||||||||||||| ||| ||||||||     
T  11361884 gtttatcttcctaagcctatgttcacgcatgggcaactttatgtcgctgtctctcgagtaacttcaagaaaaggtttgaagctgctcatcctggatgaag 11361785  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11361784 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 11361717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 32436 - 32269
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||| ||| ||||||| |||||| || |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  32436 gtttatcttcctaagcctgtgttcacacatggacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaag 32337  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32336 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 32269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 10000033 - 9999866
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||  || |||||||||||   ||||||||||||  | |||||| |||||||| ||||||||||||||| || || |||||||||||||    
T  10000033 gtttatcttcctaaacccgtgttcacgcatgagcaactctatgtcgttgtctctcaagttacttctagaaaaggtttgaaactactcatcttggatgaaa 9999934  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  9999933 ataataatgttttcaaggagaccacaaatgttgtgtatcgtgaagttttt-taaaaagtatgatcattg 9999866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 10231450 - 10231283
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || |||||||||||   ||||||||||||  | ||||||||||||||| ||||||||||||||| || || ||||||||||||     
T  10231450 gtttatcttcctaagcccgtgttcacgcatgagcaactctatgtcgttgtctctcgagttacttctagaaaaggtttgaaactactcatcttggatgaag 10231351  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  | |||||||||||||||    
T  10231350 ataataatgttttcaaggagaccacaaatgttgtgtatcgtgaagttttt-tagaaagtatgatcattg 10231283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 10235048 - 10234881
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || |||||||||||   ||||||||||||  | ||||| ||||||||| ||||||||||||||| ||||| ||||||||||||     
T  10235048 gtttatcttcctaagcccgtgttcacgcatgagcaactctatgtcgttgtctcttgagttacttctagaaaaggtttgaaactgctcatcttggatgaag 10234949  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||    
T  10234948 ataataatgttttcaaggagaccataaatgttgtgtatcgtgaagttttt-taaaaagtatgatcattg 10234881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 11368272 - 11368105
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||| ||||||  ||||||||||| ||||||| |||||| || |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  11368272 gtttatcttcttaagtctgtgttcacgcatggacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaag 11368173  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  11368172 ataataatgtttgtaaggagaccaaaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 11368105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 15329191 - 15329327
Alignment:
Q  87 gacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaataataatgtttgcaaggagaccacaaatgt 186  Q
    |||||||||||||| || ||||||||||||||| || |||||||||||||||||| || ||| ||||| |||||||||||||||||||||||||||||||    
T  15329191 gacaactctatgtcgctgtctctcgagttacttctataaaaggtttgaagctgctcattttgaatgaagataataatgtttgcaaggagaccacaaatgt 15329290  T
Q  187 tgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  15329291 tgtgtatcgtgaagtttttc-aaaaagtatgttcattg 15329327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 41763955 - 41764123
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||| |||| |  ||||||||||| ||||||| |||||| || |||||||||| ||||  ||||||||| ||||| || | ||| ||||||||     
T  41763955 gtttatcttcttaagcctgtgttcacgcatggacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagttggtcatcctggatgaag 41764054  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41764055 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaaatttttcaaaaaagtatgatcattg 41764123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 10038266 - 10038099
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| ||||||| |||||| || |||||| ||| ||||  ||| ||||| | |||||||| ||| ||||||||     
T  10038266 gtttatcttcctaagcctgtgttcacgcatggacaactttatgtcgctgtctctcaagtaacttcaagagaaggtctaaagctgctcatcatggatgaag 10038167  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10038166 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 10038099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 10969374 - 10969540
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| || |||||| |||  || |||||||||||||||  ||||||||| |||||||||| |||||| |||||     
T  10969374 gtttatcttcctaagcctgtgttcacgcatggataactctgtgttgctttctctcgagttacttcaagaaaaggtctgaagctgctcatcttgaatgaag 10969473  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    || |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  10969474 atgataatgtttgcaaggagaccac-aatgttgtgtatcgtgaagtttttc-gaaaagtatgatcattg 10969540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 41221735 - 41221641
Alignment:
Q  129 gtttgaagctgctaatcttggatgaaaataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||| |||| ||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  41221735 gtttgaagttgctcatcttcgatgaagataataatgtttgcaaggagaccacatatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 41221641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 27192115 - 27191948
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||     
T  27192115 gtttatcttcctaagcccgtgttcacgcatggacaactctatgtcgctgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaat 27192016  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  27192015 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttc-agaaagtatgatcattg 27191948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 27841929 - 27841762
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||     
T  27841929 gtttatcttcctaagcccgtgttcacgcatggacaactctatgtcgctgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaat 27841830  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  27841829 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttc-agaaagtatgatcattg 27841762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 17684422 - 17684589
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||     
T  17684422 gtttatcttcctaagcccgtgttcacgcatggacaactctatgtcattgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaat 17684521  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||    
T  17684522 ataataatgtttgcaaggagaccacatatgttgtgtgtcgtgaagtttttc-aaaaagtatgatcattg 17684589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 27509000 - 27508833
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||| |||||||| || ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| |  ||||||||||||     
T  27509000 gtttatattcctaagcccgtgttcacgcatggacaactctatgtcgctgtctctcgagttacttttagaaaaggtttgaagctacccatcttggatgaag 27508901  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27508900 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 27508833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 40488287 - 40488457
Alignment:
Q  60 atcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaataa 159  Q
    ||||||||||| || ||||||||||| | |||||||||||| || ||||||||||||||| ||||||||||||||||||| | |||||||||||| ||||    
T  40488287 atcttcctaagcccgtgttcacgcatgggcaactctatgtcgctgtctctcgagttacttctagaaaaggtttgaagctgttcatcttggatgaagataa 40488386  T
Q  160 taatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattgatgatgt 231  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| ||||    
T  40488387 taatgtttgcaaggagaccataaatgttgtgtattgtgaagtttttc-aaaaagtatgatcattgattatgt 40488457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 2867649 - 2867819
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaa- 154  Q
    ||||||||||||||| || ||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||     
T  2867649 gtttatcttcctaagcccgtgttcacgcatggacaactctatgtcgctgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaag 2867748  T
Q  155 --aataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
      |||||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  2867749 ataataataatgtttgcaagtagaccataaatgttgtgtatcctgaagtttttc-aaaaagtatgatcattg 2867819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 21394996 - 21394829
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| |||||||||||||| || |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  21394996 gtttatcttcctaagcctgtgttcacgcatggacaactctatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaag 21394897  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21394896 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 21394829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 24245476 - 24245310
Alignment:
Q  57 tttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaa 156  Q
    |||||||||||||| || |||||| |||| | ||||||||||||  | ||||||||||||||| |||||||||| |||||||||| |||| ||||||| |    
T  24245476 tttatcttcctaagcccgtgttcatgcatgggcaactctatgtcgttgtctctcgagttacttctagaaaaggtatgaagctgctcatctaggatgaaga 24245377  T
Q  157 taataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24245376 taataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 24245310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 35609311 - 35609143
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||||||| |||||||||||||  || ||||||||||||||| ||||||||||||||||||||| ||||||||||||     
T  35609311 gtttatcttcctaagcccgtgttcacgcatggacaactctatgttgctgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaag 35609212  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgta-tcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||  |||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||    
T  35609211 ataataacttttgcaaggagaccacaaatgttgtgtattcatgaagtttttc-aaaaagtatgatcattg 35609143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 28666766 - 28666933
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| ||||||| ||||||  | |||||||||| ||||   |||||||| |||||||||| ||| ||||||||     
T  28666766 gtttatcttcctaagcctgtgttcacgcatagacaactttatgtcgttgtctctcgagtaacttcatgaaaaggtctgaagctgctcatcctggatgaag 28666865  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28666866 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattg 28666933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 37825600 - 37825767
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| ||||||| ||||||  | |||||||||| ||||   |||||||| |||||||||| ||| ||||||||     
T  37825600 gtttatcttcctaagcctgtgttcacgcatagacaactttatgtcgttgtctctcgagtaacttcatgaaaaggtctgaagctgctcatcctggatgaag 37825699  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37825700 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattg 37825767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 56 - 222
Target Start/End: Original strand, 41920767 - 41920932
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| ||||||| |||||| || |||||||||| ||||   |||||||| ||||||| || ||| ||||||||     
T  41920767 gtttatcttcctaagcctgtgttcacgcatagacaactttatgtcgctgtctctcgagtaacttcatgaaaaggtctgaagctactcatcctggatgaag 41920866  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcat 222  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  41920867 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagttttt-taaaaagtatgatcat 41920932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 3642920 - 3642843
Alignment:
Q  146 ttggatgaaaataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3642920 ttggatgaagataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 3642843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 24269663 - 24269735
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaag 128  Q
    |||||||||||||||    ||||||||||| | |||||||||||| || ||||||||||||||| ||||||||    
T  24269663 gtttatcttcctaagcatgtgttcacgcatgggcaactctatgtcgctgtctctcgagttacttctagaaaag 24269735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 623 - 456
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||     
T  623 gtttatcttcctaagcccgtgttcacgcatggacaactctatgtcgctgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaag 524  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  523 ataataatgttcgcaaggagaccacaaatgtcgtgtatcgtgaagtttttca-aaaagtatgatcattg 456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 57 - 224
Target Start/End: Original strand, 97418 - 97584
Alignment:
Q  57 tttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaa 156  Q
    |||||||||||||| || ||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||||||||||||| |||||||||||| |    
T  97418 tttatcttcctaagcccgtgttcacgcatggacaactctatgtcgctgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaaga 97517  T
Q  157 taataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  97518 taataacgtttgcaaggagaccacgaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattg 97584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 21070655 - 21070821
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||||||| | |||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||     
T  21070655 gtttatcttcctaagcccgtgttcacgcatgggcaactctatgtcgctgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaag 21070754  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcatt 223  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  21070755 ataataatgtttgcaaggagaccacaaatgttgtgcatcgtgaagtttttc-aaaaagtatgatcatt 21070821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 5829148 - 5829315
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||||||| | ||||||||| || || |||||| |||||||| ||||||||||||||| ||||| ||||||||||||     
T  5829148 gtttatcttcctaagcccgtgttcacgcatgggcaactctatttcgctgtctctcaagttacttctagaaaaggtttgaaactgctcatcttggatgaag 5829247  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||| |||||| |||| | |||||||||||||||||||||||  |||||||||||||||||    
T  5829248 ataataatgttttcaaggataccatatatgttgtgtatcgtgaagttttt-taaaaagtatgatcattg 5829315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 12786572 - 12786739
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| ||||||| ||||||  | |||||||||| ||||   |||||||| |||||||||| ||| ||||||||     
T  12786572 gtttatcttcctaagcctgtgttcacgcatagacaactttatgtcgttgtctctcgagtaacttcatgaaaaggtctgaagctgctcatcctggatgaag 12786671  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12786672 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattg 12786739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 7036345 - 7036180
Alignment:
Q  58 ttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaat 157  Q
    ||||||||||||| |  || |||||||| ||||||| |||||| || |||||| ||| ||||  ||||||||| |||||||||| ||| |||||||| ||    
T  7036345 ttatcttcctaagcctgtgctcacgcatggacaactttatgtcgctgtctctcaagtaacttcaagaaaaggtctgaagctgctcatcatggatgaagat 7036246  T
Q  158 aataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7036245 aataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 7036180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 9001738 - 9001905
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||||||||    ||||||||||| ||||||| ||||||  | |||||||||| ||||  ||||||||| ||||| |||| ||| ||||||||     
T  9001738 gtttatcttcctaagcttgtgttcacgcatggacaactttatgtcgttgtctctcgagtaacttcaagaaaaggtctgaagttgcttatcctggatgaag 9001837  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  9001838 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagattttc-aaaaagtatgaccattg 9001905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 42231710 - 42231638
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaag 128  Q
    ||||||||||||||| || ||||||||||| | |||||||||||| || ||||||||||||||| ||||||||    
T  42231710 gtttatcttcctaagcccgtgttcacgcatgggcaactctatgtcgctgtctctcgagttacttctagaaaag 42231638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 56 - 231
Target Start/End: Original strand, 25543384 - 25543558
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||| | |||||| || ||||||||||| | ||||| |||||| || ||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  25543384 gtttatatccctaagcccgtgttcacgcatgggcaactgtatgtcgctgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaaa 25543483  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattgatgatgt 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  25543484 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattgattatgt 25543558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 56 - 220
Target Start/End: Original strand, 15033174 - 15033337
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||||||| |||||||||||||| || ||||||||||||||| ||||||| |||||||| |||| ||||||||||||     
T  15033174 gtttatcttcctaagcccgtgttcacgcatggacaactctatgtcgctgtctctcgagttacttatagaaaatgtttgaagttgctcatcttggatgaag 15033273  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatc 220  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15033274 ataataatatttgcaaggagaccacaaatgttgtgtatcgtgaagtttttc-aaaaagtatgatc 15033337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 6088836 - 6088670
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||| |||||||| || ||||||||||| |||||||||||||| || ||||||||||||||| |||||||||||||||| |||| ||||||||||||     
T  6088836 gtttatattcctaagcccgtgttcacgcatggacaactctatgtcgctgtctctcgagttacttctagaaaaggtttgaagttgctcatcttggatgaag 6088737  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcatt 223  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  6088736 ataataatgtttgcaaggagaccacaaatgttgtgcatcgttaagtttttca-aaaagtatgatcatt 6088670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 43449102 - 43448935
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| |||||||||||||| || |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  43449102 gtttatcttcctaagcctgtgttcacgcatggacaactctatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaag 43449003  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43449002 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 43448935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 26832247 - 26832080
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || |||||||||||   ||||||||||||  | ||||||||||||||| ||||||||||||||| ||||| ||||||||||||     
T  26832247 gtttatcttcctaagcccgtgttcacgcatgagcaactctatgtcgttgtctctcgagttacttctagaaaaggtttgaaactgctcatcttggatgaag 26832148  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  26832147 ataataatgttttcaaggagaccacaaatgttgtgtatcgtgaagttttt-taaaaagtatgatcattg 26832080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 56 - 220
Target Start/End: Original strand, 14193405 - 14193569
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || |||||| ||||  ||||||||||||  || ||||||||||||||| ||||||||||||||||||||| ||||||||||||     
T  14193405 gtttatcttcctaagcccgtgttcaagcatgaacaactctatgttgctgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaag 14193504  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgta-tcgtgaagtttttcaaaaaagtatgatc 220  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  14193505 ataataacgtttgcaaggagaccacaaatgttgtgtattcgtgaagtttttc-aaaaagtatgatc 14193569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 2261581 - 2261748
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || |||||||| ||  |||||| |||||| || ||||||||||||||| |||||||||||||||| |||| || ||||||| |     
T  2261581 gtttatcttcctaagcccgtgttcacgtatgaacaactttatgtcgctgtctctcgagttacttctagaaaaggtttgaagttgctcatattggatggag 2261680  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  2261681 ataataatgtttgcaaggagaccacgaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattg 2261748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 39882809 - 39882642
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||| |||| |  ||||||||||| ||||||| |||||| ||||||||||||| ||||  ||||||||| ||||| |||| ||| |||||||||    
T  39882809 gtttatcttcataagcctgtgttcacgcatggacaactttatgtcgctatctctcgagtaacttcaagaaaaggtctgaagttgctcatcctggatgaaa 39882710  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39882709 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 39882642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 43524428 - 43524599
Alignment:
Q  59 tatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaata 158  Q
    |||||||||| | || ||||||||||| |||||||||||||| || ||||||||||||||| ||||| ||||||| ||||||| || ||||||||| |||    
T  43524428 tatcttcctaggcccgtgttcacgcatggacaactctatgtcgctgtctctcgagttacttctagaagaggtttgtagctgctcatattggatgaagata 43524527  T
Q  159 ataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattgatgatgt 231  Q
    ||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  43524528 ataatatgtgcaaggagaccacaaatgttgtgtatcgtgaagtttttc-aaaaagtatgataattgattatgt 43524599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 56 - 231
Target Start/End: Complemental strand, 37372562 - 37372388
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  | ||||||||| ||||||| |||||| || |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  37372562 gtttatcttcctaagcctgtattcacgcatggacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaag 37372463  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattgatgatgt 231  Q
    || |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  37372462 atgataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattgattatgt 37372388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 18116466 - 18116318
Alignment:
Q  75 tgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaataataatgtttgcaagga 174  Q
    ||||||||||| ||||||| |||||| || ||||||||||||||| ||||| ||||||| ||||||| || ||||||||| |||||||| | ||||||||    
T  18116466 tgttcacgcatggacaactttatgtcgctgtctctcgagttacttctagaagaggtttgtagctgctcatattggatgaagataataatatgtgcaagga 18116367  T
Q  175 gaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18116366 gaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 18116318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 8429168 - 8429335
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||||||||    ||||||||||| ||||||| ||||||  | |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  8429168 gtttatcttcctaagcatgtgttcacgcatagacaactttatgtcgatgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaag 8429267  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8429268 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattg 8429335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 37260941 - 37260774
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |   |||||||||| ||||||| |||||| || |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  37260941 gtttatcttcctaagcctgcgttcacgcatggacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcatggatgaag 37260842  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  37260841 ataataatgtttgtaaggagaccacaaattttgtgtatcgtgaagtttttca-aaaagtatgatcattg 37260774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 27880709 - 27880544
Alignment:
Q  57 tttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaa 156  Q
    |||||||||||||| |  |||| |||||| ||||||| |||||| || |||||||||| ||||  ||||||||| |||||||||| ||| |||||||| |    
T  27880709 tttatcttcctaagcctgtgtttacgcatggacaact-tatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaaga 27880611  T
Q  157 taataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27880610 taataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 27880544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 3689604 - 3689437
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||||||||    ||||||||||| | ||||| |||||| || |||||||||| ||||  ||||||||||||||||||||  || ||||||||     
T  3689604 gtttatcttcctaagcttgtgttcacgcatgggcaactttatgtcgctgtctctcgagtaacttcaagaaaaggtttgaagctgctcgtcctggatgaag 3689505  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  3689504 ataataatgtttgtaaggagaccacaaatattgtgtatcgtgaagtttttca-aaaagtatgatcattg 3689437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 3877183 - 3877350
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||||||||    ||||||||||| | ||||| |||||| || |||||||||| ||||  ||||||||||||||||||||  || ||||||||     
T  3877183 gtttatcttcctaagcttgtgttcacgcatgggcaactttatgtcgctgtctctcgagtaacttcaagaaaaggtttgaagctgctcgtcctggatgaag 3877282  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  3877283 ataataatgtttgtaaggagaccacaaatattgtgtatcgtgaagtttttc-aaaaagtatgatcattg 3877350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 56 - 211
Target Start/End: Complemental strand, 4051437 - 4051282
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||| ||| ||||||| |||||  || |||||||||| ||||  ||||||||| ||||| |||| ||  ||||||||     
T  4051437 gtttatcttcctaagcctgtgttcacacatggacaactttatgttgctgtctctcgagtaacttcaagaaaaggtctgaaggtgctcattgtggatgaag 4051338  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaa 211  Q
    ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||    
T  4051337 ataataatgtttgtaaggagaccagaaatgttgtatatcgtgaagtttttcaaaaa 4051282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 211
Target Start/End: Original strand, 10692465 - 10692554
Alignment:
Q  122 agaaaaggtttgaagctgctaatcttggatgaaaataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaa 211  Q
    |||||||| |||||||| || || ||| | ||| |||||||| ||||||||||||||| |||| ||||||||||||| || |||||||||    
T  10692465 agaaaaggattgaagctcctgatattgtacgaagataataatatttgcaaggagaccataaatattgtgtatcgtgaggtctttcaaaaa 10692554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 10024689 - 10024617
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaag 128  Q
    ||||||||||||||| || ||||||| ||| | |||||||||||| || ||||||||||||||| ||||||||    
T  10024689 gtttatcttcctaagcccgtgttcacacatgggcaactctatgtcgctgtctctcgagttacttctagaaaag 10024617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 24630454 - 24630530
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggttt 132  Q
    ||||||||||||||| || ||||||||||| | |||||||||||| || ||||||||||||||| ||| ||| ||||    
T  24630454 gtttatcttcctaagcccgtgttcacgcatgggcaactctatgtcgctgtctctcgagttacttctagtaaaagttt 24630530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 30347137 - 30347209
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaag 128  Q
    ||||||||||||||  || ||||||||||| | |||||||||||| || ||||||||||||||| ||||||||    
T  30347137 gtttatcttcctaaacccgtgttcacgcatgggcaactctatgtcgctgtctctcgagttacttctagaaaag 30347209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 30313787 - 30313734
Alignment:
Q  169 caaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcatt 223  Q
    ||||||||||||||||||||| |||| |||||||||||| |||||||||||||||    
T  30313787 caaggagaccacaaatgttgtatatcatgaagtttttca-aaaagtatgatcatt 30313734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 18343751 - 18343584
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |||| ||||||||| |||||||||||||| || ||||| ||||||||| ||||||||||||||||||||| ||||||||||||     
T  18343751 gtttatcttcctaagcccatcttcacgcatggacaactctatgtcgctgtctcttgagttacttctagaaaaggtttgaagctgctcatcttggatgaag 18343652  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  18343651 ataataatgtttgcaaggaaaccacaactgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 18343584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 10187170 - 10187003
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||| | |||||||| |||||| |||||||||||||||| |||| ||||||||||||     
T  10187170 gtttatcttcctaagcccgtgttcacgcatggacaactctatgtcattgtctctcgacttacttctagaaaaggtttgaagttgctcatcttggatgaat 10187071  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  10187070 ataataatgtttgcaaggagaccacatatgttgtgtatcgtgaactttttca-aaaagtatgatcattg 10187003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 4220298 - 4220468
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaa- 154  Q
    |||||||||||||||  | ||||||||||| |||||||||||||| || ||||||||||||||| || |||||||||||||||||| ||||||||||||     
T  4220298 gtttatcttcctaagctcgtgttcacgcatggacaactctatgtcgctgtctctcgagttacttctataaaaggtttgaagctgctcatcttggatgaag 4220397  T
Q  155 --aataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
      ||| |||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  4220398 ataatgataatgtttgcaagtagaccataaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattg 4220468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 2202773 - 2202940
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||| ||||| || ||||||||||| || |||| |||||   | ||||||||||||||| ||||||||||||||||||||| ||||||||||||     
T  2202773 gtttatctttctaagcccgtgttcacgcatggaaaactttatgttgttgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaag 2202872  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  2202873 ataataatgtttgaaaggagaccacaaatgttgtgtatcgtgaaatttttc-aaaaagtatgatcattg 2202940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 24196526 - 24196359
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| |||||||||||||| || |||||| ||| ||||  ||||||||| |||||||||| ||| | ||||||     
T  24196526 gtttatcttcctaagcctgtgttcacgcatggacaactctatgtcgctgtctctcaagtaacttcaagaaaaggtctgaagctgctcatcctagatgaag 24196427  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24196426 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 24196359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 31512104 - 31512271
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||| | ||||||| |||||| || |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  31512104 gtttatcttcctaagcctgtgttcacgcttggacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaag 31512203  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31512204 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattg 31512271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 12517014 - 12516847
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| | |||||||||||| ||||||| |||||| || |||||| ||| ||||  ||||||||| ||||||| || ||| ||||||||     
T  12517014 gtttatcttcctaagcctatgttcacgcatggacaactttatgtcgctgtctctcaagtaacttcaagaaaaggtctgaagctactcatcctggatgaag 12516915  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    || |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12516914 atgataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 12516847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 15333268 - 15333101
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| ||||||| |||||| || |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  15333268 gtttatcttcctaagcctgtgttcacgcatggacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaag 15333169  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| |||||||||||||||||||| |||| |||||||||||| ||||||||||||||||    
T  15333168 ataataatgtttgtaaggagaccacaaatgttgtatatcctgaagtttttca-aaaagtatgatcattg 15333101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 29641940 - 29642107
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||| | ||||||| |||||| || |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  29641940 gtttatcttcctaagcctgtgttcacgcttggacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaag 29642039  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  29642040 ataataatgtttgtaaggagaccataaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattg 29642107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 12519233 - 12519070
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||| ||||||||  | ||||||||||| |||||||||||||  || ||||||||||||| | ||||||||||||||||||||| || |||||||||     
T  12519233 gtttatattcctaagcacgtgttcacgcatggacaactctatgttgctgtctctcgagttacatatagaaaaggtttgaagctgctcatattggatgaag 12519134  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatc 220  Q
    ||||||||||||||||||||| |||||||||||| |||||| || ||||||| ||||||||||||    
T  12519133 ataataatgtttgcaaggagatcacaaatgttgtctatcgtaaattttttca-aaaagtatgatc 12519070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 48239071 - 48239238
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||  | | |||||| |||||| ||||||||||||||||||||| ||||||||||||     
T  48239071 gtttatcttcctaagcccgtgttcacgcatggacaactctatgtcgatgtatctcgaattacttctagaaaaggtttgaagctgctcatcttggatgaag 48239170  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48239171 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattg 48239238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 36206841 - 36206675
Alignment:
Q  57 tttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaa 156  Q
    |||||||||||||| || || |||||||| |||||||||||||| || ||||||||||||||| ||||||||||||||||||||| |||||||||||| |    
T  36206841 tttatcttcctaagcccgtgatcacgcatggacaactctatgtcgctgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaaga 36206742  T
Q  157 taataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  36206741 tcataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagttttt-taaaaagtatgatcattg 36206675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 2328795 - 2328629
Alignment:
Q  57 tttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaa 156  Q
    |||||||||||||| || ||||||||||| |||||||||||||| || ||||||||||||||| |||||||||||||||| |||| ||||||||| || |    
T  2328795 tttatcttcctaagcccgtgttcacgcatggacaactctatgtcgctgtctctcgagttacttctagaaaaggtttgaagttgctcatcttggataaaga 2328696  T
Q  157 taataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  2328695 taataatgtttgcaaggagaccacaaatgttgtgtattgtgaactttttca-aaaagtatgatcattg 2328629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 220
Target Start/End: Original strand, 16748262 - 16748425
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| |||||||||||||| || |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  16748262 gtttatcttcctaagcctgtgttcacgcatggacaactctatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaag 16748361  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatc 220  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  16748362 ataataatgtttgcaaggagaccgcaaatgttgtgtatcgtgaagtttttc-aaaaagtatgatc 16748425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 18148314 - 18148147
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||||||    ||||||||||||  | ||||||||||||||| || |||||||||||||||||| ||||||||||||     
T  18148314 gtttatcttcctaagcccgtgttcacgcacgagcaactctatgtcgttgtctctcgagttacttctataaaaggtttgaagctgctcatcttggatgaag 18148215  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  18148214 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtcaagttttt-taaaaagtatgatcattg 18148147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 6311587 - 6311752
Alignment:
Q  58 ttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaat 157  Q
    ||||||||||||| || ||||||||||| ||||||| |||| | || |||||||||| ||||  ||||||||| |||||||||| ||| |||||||| ||    
T  6311587 ttatcttcctaagcccgtgttcacgcatggacaactttatgccgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaatat 6311686  T
Q  158 aataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6311687 aataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattg 6311752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 211
Target Start/End: Complemental strand, 28961700 - 28961547
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||||||| ||  |||||||||| || ||||||||||||||| ||||||| ||||||||||||| |||||| |||||     
T  28961700 gtttatcttcctaagcccgtgttcacgcatgga--actctatgtcgctgtctctcgagttacttctagaaaaagtttgaagctgctcatcttgaatgaag 28961603  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaa 211  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  28961602 ataataatgtttgcaaggagaccacgaatgttgtgtatggtgaagtttttcaaaaa 28961547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 48775928 - 48776095
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||| ||| ||||||| |||||||||||||||||||| ||||  ||||||||| ||||| |||| ||| ||||||||     
T  48775928 gtttatcttcctaagcctgtgttcacacatggacaactttatgtcactatctctcgagtaacttgaagaaaaggtctgaagttgctcatcctggatgaag 48776027  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  48776028 ataataatgtttgtaaggagaccacaaatgttgtgtatcatgaagtttttc-aaaaagtatgaacattg 48776095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 16041651 - 16041484
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||| |||| |  ||||||||||| ||||||| ||||||  | |||||||||| ||||  ||||||||| ||||| |||| ||| ||||||||     
T  16041651 gtttatcttcataagcctgtgttcacgcatggacaactttatgtcgttgtctctcgagtaacttcaagaaaaggtctgaagttgctcatcctggatgaag 16041552  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16041551 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 16041484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 37390738 - 37390905
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| ||||||| |||||  || |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  37390738 gtttatcttcctaagcctgtgttcacgcatggacaactttatgtagctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaag 37390837  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  37390838 ataataatgtttgtaagaagaccacaaatgttttgtatcgtgaagtttttc-aaaaagtatgatcattg 37390905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 56 - 211
Target Start/End: Original strand, 25074443 - 25074598
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||| ||| ||||||| |||||  || |||||||||| ||||  ||||||||| ||||| |||| ||  ||||||||     
T  25074443 gtttatcttcctaagcctgtgttcacacatggacaactttatgttgctgtctctcgagtaacttcaagaaaaggtctgaaggtgctcattgtggatgaag 25074542  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaa 211  Q
    ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||    
T  25074543 ataataatgtttgtaaggagaccagaaatgttgtatatcgtgaagtttttcaaaaa 25074598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 52500295 - 52500223
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaag 128  Q
    ||||||||||||||| || ||||||||||| | |||||||||||| || ||||||||||||||| ||||||||    
T  52500295 gtttatcttcctaagcccgtgttcacgcatgggcaactctatgtcgctgtctctcgagttacttctagaaaag 52500223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 56 - 211
Target Start/End: Original strand, 495 - 650
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||  || ||||||||||| |||||||||||||| |||||||||||||||||  |||||||||||||||| || | ||||||||||||     
T  495 gtttatcttcctaaacccgtgttcacgcatggacaactctatgtcgctatctctcgagttactactagaaaaggtttgaagttgttcatcttggatgaag 594  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  595 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaa 650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 18632 - 18465
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||||||||    ||||||||||| | |||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||     
T  18632 gtttatcttcctaagcttgtgttcacgcatgggcaactctatgtcgctgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaag 18533  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  18532 ataataatgtttgcaaggagaccacatatgttgtgtatcgtgaagttttt-taaaaagtatgatcattg 18465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 125855 - 125688
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||||||| |||||||||||||   | | |||||| |||||| ||||||||||||||||||||| ||||||||||||     
T  125855 gtttatcttcctaagcccgtgttcacgcatggacaactctatgttgttgtttctcgatttacttctagaaaaggtttgaagctgctcatcttggatgaag 125756  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  125755 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttc-aataagtatgatcattg 125688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 165156 - 164989
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| | |||||||||||| | ||||| |||||| || |||||||||| ||||  |||||||||||||||||||| ||| ||||||||     
T  165156 gtttatcttcctaagcctatgttcacgcatgggcaactttatgtcgctgtctctcgagtaacttcaagaaaaggtttgaagctgctcatcctggatgaag 165057  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  165056 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 164989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 182437 - 182270
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||  |  ||||||||||| | ||||| |||||| || |||||||| | ||||  |||||||||||||||||||| ||||||||||||     
T  182437 gtttatcttcctaaacctgtgttcacgcatgggcaactttatgtcgctgtctctcgattaacttcaagaaaaggtttgaagctgctcatcttggatgaag 182338  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  182337 ataataatgtttgtaaggaaaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 182270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 173151 - 173104
Alignment:
Q  176 accacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  173151 accacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 173104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 49709799 - 49709636
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| |||||||||||||| || |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  49709799 gtttatcttcctaagcctgtgttcacgcatggacaactctatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaag 49709700  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  49709699 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatc 49709636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 35855533 - 35855366
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| ||||||| |||||| || |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  35855533 gtttatcttcctaagcctgtgttcacgcatggacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaag 35855434  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35855433 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 35855366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 211
Target Start/End: Original strand, 37531998 - 37532151
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||||||| ||  |||||||||| || ||||||||||||||| ||||||| ||||||||||||| |||||| |||||     
T  37531998 gtttatcttcctaagcccgtgttcacgcatgga--actctatgtcgctgtctctcgagttacttctagaaaaagtttgaagctgctcatcttgaatgaag 37532095  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaa 211  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  37532096 ataataatgtttgcaaggagaccacgaatgttgtgtatggtgaagtttttcaaaaa 37532151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 787507 - 787344
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||| |||  ||||||||||||   | ||||||||||||| | |||||||||| |||||||||| ||||||||||||     
T  787507 gtttatcttcctaagcccgtgttcacacatgaacaactctatgttgttgtctctcgagttacatatagaaaaggtgtgaagctgctcatcttggatgaag 787408  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatc 220  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||    
T  787407 ataataatgtttgcaaggagaccacaaatgttgtatatcctgaagtttttca-aaaagtatgatc 787344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 1860303 - 1860136
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| ||||||| |||||| || |||||||||| ||||  ||||||||| ||||||| || ||| ||||||||     
T  1860303 gtttatcttcctaagcctgtgttcacgcatggacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctactcatcgtggatgaag 1860204  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  1860203 ataataatgtttgtaaggagactacaaatgttgtgtatcgtgaagtttttca-aaaagtatgatcattg 1860136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 31921099 - 31920931
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||| |||| |  ||||||||||| ||||||| |||||| || |||||||||| ||||  ||||||||| ||||| || | ||| ||||||||     
T  31921099 gtttatcttcttaagcctgtgttcacgcatggacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagttggtcatcctggatgaag 31921000  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31920999 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaaatttttcaaaaaagtatgatcattg 31920931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 49787421 - 49787588
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| ||||||| ||||||  | |||||||||| ||||   ||||||||  ||||||||| ||| ||||||||     
T  49787421 gtttatcttcctaagcctgtgttcacgcatagacaactttatgtcgttgtctctcgagtaacttcatgaaaaggtccgaagctgctcatcctggatgaag 49787520  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  49787521 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattg 49787588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 38517703 - 38517579
Alignment:
Q  75 tgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaataataatgtttgcaagga 174  Q
    ||||||||||| ||||||| |||||| || ||||||| || ||||  ||||||||| | |||||||| ||| |||||||  ||||||||||||| |||||    
T  38517703 tgttcacgcatggacaactttatgtcgctgtctctcgggtaacttcaagaaaaggtctaaagctgctcatcctggatgacgataataatgtttgtaagga 38517604  T
Q  175 gaccacaaatgttgtgtatcgtgaa 199  Q
    ||||||| |||||||||||||||||    
T  38517603 gaccacagatgttgtgtatcgtgaa 38517579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 55559631 - 55559703
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaag 128  Q
    |||||| |||||||| |  ||||||||||| | |||||||||||| || ||||||||||||||| ||||||||    
T  55559631 gtttattttcctaagcctgtgttcacgcatgggcaactctatgtcgctgtctctcgagttacttctagaaaag 55559703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1424 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold1424
Description:

Target: scaffold1424; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 56 - 231
Target Start/End: Complemental strand, 1310 - 1136
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||||||| | |||||||||||| || ||||||||||||||| || |||||||||||||||  | ||||||||||||     
T  1310 gtttatcttcctaagcccgtgttcacgcatgggcaactctatgtcgctgtctctcgagttacttctataaaaggtttgaagctattcatcttggatgaag 1211  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattgatgatgt 231  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| |||||| ||||    
T  1210 ataataatgtttgcaacgagaccacaaatgttgtgtatcgtgaagtttttc-agaaagtatgattattgattatgt 1136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 56 - 210
Target Start/End: Original strand, 132468 - 132622
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| ||||||||||||||||| |||||||||| ||||  |||||| || |||||||||| ||| ||||||||     
T  132468 gtttatcttcctaagcctgtgttcacgcatggacaactctatgtcactgtctctcgagtaacttcaagaaaatgtctgaagctgctcatcctggatgaag 132567  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  132568 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaa 132622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 56 - 210
Target Start/End: Original strand, 310285 - 310439
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| ||||||||||||||||| |||||||||| ||||  |||||| || |||||||||| ||| ||||||||     
T  310285 gtttatcttcctaagcctgtgttcacgcatggacaactctatgtcactgtctctcgagtaacttcaagaaaatgtctgaagctgctcatcctggatgaag 310384  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  310385 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaa 310439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 5852 - 6019
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| || ||||||||||| |  ||||| ||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||     
T  5852 gtttatcttcctaagcccgtgttcacgcatgggaaactccatgtcgctgtctctcgagttacttctagaaaaggtttgaagctgctcatcttggatgaag 5951  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||||||  |||||||||||||||||    
T  5952 ataataatgtttgcaaggagaccacagatgttttgtattgtgaagttttt-taaaaagtatgatcattg 6019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 49530 - 49697
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  ||||||||||| ||||||| ||||||  | |||||||||| ||||   |||||||| |||||||||| ||| ||||||||     
T  49530 gtttatcttcctaagcctgtgttcacgcatagacaactttatgtcgttgtctctcgagtaacttcatgaaaaggtctgaagctgctcatcctggatgaag 49629  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  49630 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattg 49697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 19083 - 18915
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||| ||||||  |||||||||||  |||||| ||| ||  | |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  19083 gtttatcttcttaagtctgtgttcacgcatgaacaactttatttcggtgtctctcgagtaacttgaagaaaaggtctgaagctgctcatcctggatgaag 18984  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18983 ataataatgttagtaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 18915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 31560 - 31393
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    ||||||||||||||| |  |||||||||||  |||||| |||||| || |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  31560 gtttatcttcctaagcctgtgttcacgcatgaacaactttatgtcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaag 31461  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||    
T  31460 ataataatgtttgtaaggagaccacaaatgttgtgtatcctgaaatttttca-aaaagtatgataattg 31393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 1165 - 1332
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaa 155  Q
    |||||||||| |||||   ||||||||||| || |||| ||| || || |||||||||| ||||  ||||||||| |||||||||| ||| ||||||||     
T  1165 gtttatcttcttaagtttgtgttcacgcatggataactttatctcgctgtctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaag 1264  T
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1265 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttttc-aaaaagtatgatcattg 1332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 4168 - 4286
Alignment:
Q  105 tctctcgagttacttttagaaaaggtttgaagctgctaatcttggatgaaaataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttt 204  Q
    |||||||||| ||||  ||||||||| |||||||||| ||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4168 tctctcgagtaacttcaagaaaaggtctgaagctgctcatcctggatgaagataataatgtttgtaaggagaccacaaatgttgtgtatcgtgaagtttt 4267  T
Q  205 tcaaaaaagtatgatcattg 224  Q
    || |||||||||||||||||    
T  4268 tc-aaaaagtatgatcattg 4286  T

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Target: scaffold0025 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 14038 - 13947
Alignment:
Q  133 gaagctgctaatcttggatgaaaataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaa-gtttttcaaaaaagtatgatcattg 224  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  14038 gaagctgctcatcttggatgaagataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaaagtttttcaaaaa-gtatgatcattg 13947  T

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Target: scaffold0025; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 16311 - 16227
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttactt-ttagaaaaggtttgaagctg 139  Q
    ||||||||||||||| || |||||| |||| ||||||||||||||  | |||||||||||| ||  |||||||||||||||||||    
T  16311 gtttatcttcctaagcccgtgttcatgcatggacaactctatgtcgttgtctctcgagttatttcatagaaaaggtttgaagctg 16227  T

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Target: scaffold0107 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 34491 - 34424
Alignment:
Q  156 ataataatgtttgcaaggagaccacaaatgttgtgtatcgtgaagtttttcaaaaaagtatgatcattg 224  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  34491 ataataatgtttgtaaggagaccacaaatgttgtgtatcgtgatgtttttca-aaaagtatgatcattg 34424  T

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Target: scaffold0118 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 29227 - 29299
Alignment:
Q  56 gtttatcttcctaagtccatgttcacgcattgacaactctatgtcactatctctcgagttacttttagaaaag 128  Q
    ||||||||||||||| || ||||||||||| | |||||||||||| || ||||||||||||||| ||||||||    
T  29227 gtttatcttcctaagcccgtgttcacgcatgggcaactctatgtcgctgtctctcgagttacttctagaaaag 29299  T

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