View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0713_low_4 (Length: 622)
Name: NF0713_low_4
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 22)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 15 - 584
Target Start/End: Original strand, 6275330 - 6275899
Alignment:
| Q |
15 |
acatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgacattttgagatactgatttgagtatgtaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6275330 |
acatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgacattttgagatactgatttgagtatgtaaa |
6275429 |
T |
|
| Q |
115 |
caagaaaatctgaagactttaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtctctcacttttaggatctgcacaaatacaaaa |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6275430 |
caagaaaatctgaagacttcaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtctctcacttttaggatctgcacaaatacaaaa |
6275529 |
T |
|
| Q |
215 |
atagcaaaatatgcattagcaagaggaatgtcttagaatcataaacaaatgaaaatttggatcaacatacttaagatataacatacataaagtgtttaaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6275530 |
atagcaaaatatgcattagcaagaggaatgtcttagaatcataaacaaatgaaaatttggatcaacatacttaagatataacatacataaagtgtttaaa |
6275629 |
T |
|
| Q |
315 |
tagaatataaaagcatataacctttcttagctggttttctgccggttctcccccttagagggtaaggcaaggtgttggatcctccaataacgggacgagc |
414 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6275630 |
taaaatataaaagcatataacctttcttagctggtttcctgccggttctccctcttcgagggtaaggcaaggtgttggatcctccaataacgggacgagc |
6275729 |
T |
|
| Q |
415 |
caaccttgcgtacttatcaggatcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaa |
514 |
Q |
| |
|
||| ||||| | ||| ||||||||||||| |||||||| ||||| |||||||||||||| || ||| || |||| || |||||||||||||||||| |
|
|
| T |
6275730 |
caagcttgctttcttgtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaa |
6275829 |
T |
|
| Q |
515 |
gtcttcaattcttcttgtctatagtagactaatggagctggtgtttcacttggaaggtatgtctatattt |
584 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
6275830 |
gtgttcaactcttcttgtctatagtagactaatggaggtggtgtttcacttggaagatatgtctatattt |
6275899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 330 - 598
Target Start/End: Original strand, 6322506 - 6322774
Alignment:
| Q |
330 |
tataacctttcttagctggttttctgccggttctcccccttagagggtaaggcaaggtgttggatcctccaataacgggacgagccaaccttgcgtactt |
429 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6322506 |
tataaccttttttagctggtttcctgccggttctgccccttcgagggtaaggcaaggtgtcggatcctccaataacgggacgagccaagtgtgcgtactt |
6322605 |
T |
|
| Q |
430 |
atcaggatcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttct |
529 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6322606 |
gtcaggatcacccaagtcattgtaaacatcgtagtcatagattctatcgtgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttct |
6322705 |
T |
|
| Q |
530 |
tgtctatagtagactaatggagctggtgtttcacttggaaggtatgtctatatttttatatatttgatg |
598 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6322706 |
tctctatagtagactaatggagctggtgtttcacttggaaggtatgtctatatttttatttatttgatg |
6322774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 334 - 594
Target Start/End: Original strand, 6333077 - 6333337
Alignment:
| Q |
334 |
acctttcttagctggttttctgccggttctcccccttagagggtaaggcaaggtgttggatcctccaataacgggacgagccaaccttgcgtacttatca |
433 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||||||| |||||||||||||| | ||||||||||||| ||||||||||||||| ||| | | ||| ||| |
|
|
| T |
6333077 |
accttttttagcatgtttcctgccggttctcccccttcgagggtaaggcaagttattggatcctccaacaacgggacgagccaagctttctttcttgtca |
6333176 |
T |
|
| Q |
434 |
ggatcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtc |
533 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6333177 |
ggatcacccaagtcattgtaaacatcgtagtcatagatcctatccgattctttgcgctcacccgttccatctcctcttaaagtcttcaattcttcttgtc |
6333276 |
T |
|
| Q |
534 |
tatagtagactaatggagctggtgtttcacttggaaggtatgtctatatttttatatattt |
594 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||| |
|
|
| T |
6333277 |
tgtagtagactaatggagctggtgtttcgcttggaaggtacgtctatatttatatttattt |
6333337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 6322197 - 6322396
Alignment:
| Q |
15 |
acatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgacattttgagatactgatttgagtatgtaaa |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||| |
|
|
| T |
6322197 |
acatcatcaaagctattaaattctggcttattgagttgtaatgtaattgcagattgtaattgaggtatgaaactttgagaagctgatttgagtatgtaaa |
6322296 |
T |
|
| Q |
115 |
caagaaaatctgaagactttaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtctctcacttttaggatctgcacaaatacaaaa |
214 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||| |||| | | ||| ||||||||||||||||||||||| || |||||||| |
|
|
| T |
6322297 |
caagaaaatctgaagacttcaagtgaccaaatgcttcatctcttggaacgtaaacaaagtcgtcccgtctctcacttttaggatctgttcacatacaaaa |
6322396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 332 - 579
Target Start/End: Original strand, 7460563 - 7460810
Alignment:
| Q |
332 |
taacctttcttagctggttttctgccggttctcccccttagagggtaaggcaaggtgttggatcctccaataacgggacgagccaaccttgcgtacttat |
431 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| |||||| |||||||||||||| | | ||||||| ||| ||||||||||| || || | || | |
|
|
| T |
7460563 |
taaccttttttagatggttttctgccggttcttccccttcgagggtaaggcaagtttccaggtcctccagcaacaggacgagccaagctagctttctggt |
7460662 |
T |
|
| Q |
432 |
caggatcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttg |
531 |
Q |
| |
|
| |||||||||||||||||||| |||||||| ||||| || || || ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7460663 |
cgggatcacccaagtcattgtagacatcataatcatatattctgtcccattccttgcgctctcccgttccatctcctcttaaagtcttcaattcttcttg |
7460762 |
T |
|
| Q |
532 |
tctatagtagactaatggagctggtgtttcacttggaaggtatgtcta |
579 |
Q |
| |
|
||| ||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7460763 |
tctgtagtacactaatggagctggtgttgcacttggaaggtatgtcta |
7460810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 332 - 584
Target Start/End: Original strand, 6425181 - 6425433
Alignment:
| Q |
332 |
taacctttcttagctggttttctgccggttctcccccttagagggtaaggcaaggtgttggatcctccaataacgggacgagccaaccttgcgtacttat |
431 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| | |||||||||| ||| |||||| |||| | | | | | |
|
|
| T |
6425181 |
taaccttttttagctggttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgacccaaggtaggtttcgagt |
6425280 |
T |
|
| Q |
432 |
caggatcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttg |
531 |
Q |
| |
|
|||| |||||||| |||||||| ||||| || ||||||||||| || ||||||||||| || ||||||||||||||||||||||||| |||||||| |
|
|
| T |
6425281 |
caggctcacccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttg |
6425380 |
T |
|
| Q |
532 |
tctatagtagactaatggagctggtgtttcacttggaaggtatgtctatattt |
584 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
6425381 |
tctatagtacaccaatggagccggtgtttcacttggaaggtatgtctacattt |
6425433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 330 - 579
Target Start/End: Original strand, 6364362 - 6364611
Alignment:
| Q |
330 |
tataacctttcttagctggttttctgccggttctcccccttagagggtaaggcaaggtgttggatcctccaataacgggacgagccaaccttgcgtactt |
429 |
Q |
| |
|
|||||||||| ||||| ||| |||||||||||||| ||| |||||||||| | |||| | |||||||||| ||| ||||||||||| || |||| ||| |
|
|
| T |
6364362 |
tataacctttacgagctgctttcctgccggttctccctcttcgagggtaagggagggtgctagatcctccaacaacaggacgagccaaactagcgttctt |
6364461 |
T |
|
| Q |
430 |
atcaggatcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttct |
529 |
Q |
| |
|
|| ||||||||| |||||||| |||||||| ||||| || || || |||||| |||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
6364462 |
gtccacatcacccaaatcattgtagacatcataatcatatattctttcccattccttacgctctccagttccatctcctcttaaagtcttcaattcttct |
6364561 |
T |
|
| Q |
530 |
tgtctatagtagactaatggagctggtgtttcacttggaaggtatgtcta |
579 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6364562 |
tgtctgtagtagactaaaggagctggtgtttcacttggaaggtatgtcta |
6364611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 304 - 585
Target Start/End: Original strand, 6290371 - 6290652
Alignment:
| Q |
304 |
aagtgtttaaatagaatataaaagcatataacctttcttagctggttttctgccggttctcccccttagagggtaaggcaaggtgttggatcctccaata |
403 |
Q |
| |
|
||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||| || || | ||||| |||| | |
|
|
| T |
6290371 |
aagtgtttaaaaagagtataaaagtttataacctttcttagctggttccctgccggttcttccccttcgagggtaagggaaattgctcgatcccccaaga |
6290470 |
T |
|
| Q |
404 |
acgggacgagccaaccttgcgtacttatcaggatcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccat |
503 |
Q |
| |
|
| |||| ||||| | | | ||||| ||||| || |||||||| ||||| || ||||| || || || ||||||||||| || ||||||| |
|
|
| T |
6290471 |
atttgacgcgccaattgaggtttcgagtcaggctcacctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctgttccat |
6290570 |
T |
|
| Q |
504 |
ctcctcttaaagtcttcaattcttcttgtctatagtagactaatggagctggtgtttcacttggaaggtatgtctatatttt |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6290571 |
ctcctcttaaagtcttcaattcttcttgtctatagtacactaatggagctggtgtttcacttggaaggtatgtctatatttt |
6290652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 6332779 - 6332960
Alignment:
| Q |
13 |
ggacatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgacattttgagatactgatttgagtatgta |
112 |
Q |
| |
|
||||||| ||||| ||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||| ||||| || |
|
|
| T |
6332779 |
ggacatcttcaaaagtgttaaactctggctgattgaattgtaatgtaagtgcagatcgtaattgaggtataacattttgagatgctgatttcagtatata |
6332878 |
T |
|
| Q |
113 |
aacaagaaaatctgaagactttaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtctctcactttta |
194 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||| | | |||||||| |||||||||||| |
|
|
| T |
6332879 |
aacaagaaagtctgaagacttcaagtggccaaatgattcatctcttggaatgtaaacaaagtcgctccgactctcactttta |
6332960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 437 - 586
Target Start/End: Original strand, 6371300 - 6371449
Alignment:
| Q |
437 |
tcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctat |
536 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
6371300 |
tcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttccatctcctcttaaagtcttcaactcttcttgtctgt |
6371399 |
T |
|
| Q |
537 |
agtagactaatggagctggtgtttcacttggaaggtatgtctatattttt |
586 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
6371400 |
agtagactaatggagctggtgtttcacttagaaggtatgtctacattttt |
6371449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 431 - 579
Target Start/End: Original strand, 6353590 - 6353738
Alignment:
| Q |
431 |
tcaggatcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttctt |
530 |
Q |
| |
|
||||| |||||||| |||||||| ||||| || ||||| || || || ||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
6353590 |
tcaggctcacccaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttctt |
6353689 |
T |
|
| Q |
531 |
gtctatagtagactaatggagctggtgtttcacttggaaggtatgtcta |
579 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6353690 |
gtctgtagtacactaatggagccggtgtttcacttggaaggtatgtcta |
6353738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 6353181 - 6353326
Alignment:
| Q |
23 |
aaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgacattttgagatactgatttgagtatgtaaacaagaaaa |
122 |
Q |
| |
|
|||| ||||||| || || ||||||| ||||||||||| | ||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6353181 |
aaaggtgttaaactcagggttattgagttgtaatgtaactacagatctcagttgaggtatgacattttgagatgctgatttgagtatgtaaacaagaaag |
6353280 |
T |
|
| Q |
123 |
tctgaagactttaagtgaccaaatgattcatctcttggaagataaa |
168 |
Q |
| |
|
||||| |||||| ||| ||||| ||||||||||||||||| |||| |
|
|
| T |
6353281 |
tctgatgactttgtgtgtccaaaagattcatctcttggaaggtaaa |
6353326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 6363969 - 6364168
Alignment:
| Q |
15 |
acatcatcaaagctgttaaattctggcttattgaattgtaatgtaattgcagattgtaattgaggtatgacattttgagatactgatttgagtatgtaaa |
114 |
Q |
| |
|
||||| |||||| ||||||| || |||| || |||||||||||||| | |||| |||| |||||||||||||||||||| | ||||||||||||| || |
|
|
| T |
6363969 |
acatcttcaaaggtgttaaactcaggctcatggaattgtaatgtaactatagatcttaatcgaggtatgacattttgagatgcagatttgagtatgtgaa |
6364068 |
T |
|
| Q |
115 |
caagaaaatctgaagactttaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtctctcacttttaggatctg--cacaaatacaa |
212 |
Q |
| |
|
||||||| ||||| |||||| ||| |||||||||||||||||||| || |||| | || || || |||||||| |||||||||| ||||||||||| |
|
|
| T |
6364069 |
caagaaagtctgatgactttgtgtgtccaaatgattcatctcttgggaggtaaacagtgtcacttcgactctcactcttaggatctgttcacaaatacaa |
6364168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 439 - 575
Target Start/End: Original strand, 6392094 - 6392230
Alignment:
| Q |
439 |
acccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctatag |
538 |
Q |
| |
|
|||||| |||||||| |||||||| ||||| || || || |||||| |||| || |||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
6392094 |
acccaaatcattgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttcttgtctgtag |
6392193 |
T |
|
| Q |
539 |
tagactaatggagctggtgtttcacttggaaggtatg |
575 |
Q |
| |
|
|| | |||||||||||||||||| ||| ||||||||| |
|
|
| T |
6392194 |
tacagtaatggagctggtgtttcccttagaaggtatg |
6392230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 437 - 567
Target Start/End: Original strand, 6264927 - 6265057
Alignment:
| Q |
437 |
tcacccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctat |
536 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| | || || ||| ||||||| ||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
6264927 |
tcacccaaatcattgtaaacatcataatcataaactctgtcccattctttgcgctcccccgttccatctcctcttaaagtcttcaactctaattgtctat |
6265026 |
T |
|
| Q |
537 |
agtagactaatggagctggtgtttcacttgg |
567 |
Q |
| |
|
||||||| | |||||| |||||||||||||| |
|
|
| T |
6265027 |
agtagacaagtggagcaggtgtttcacttgg |
6265057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 6424909 - 6425033
Alignment:
| Q |
77 |
aggtatgacattttgagatactgatttgagtatgtaaacaagaaaatctgaagactttaagtgaccaaatgattcatctcttggaagataaatatactcg |
176 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| || ||||||| |||||||||||| ||| ||||||| |||||||||||||| |||| | || |
|
|
| T |
6424909 |
aggtatgatattttgagatgctgatttgagtatgaaagcaagaaagtctgaagactttgtgtgtccaaatgcctcatctcttggaaggtaaacagtgccg |
6425008 |
T |
|
| Q |
177 |
ctccgtctctcacttttaggatctg |
201 |
Q |
| |
|
||||| |||||||| |||||||||| |
|
|
| T |
6425009 |
ctccgactctcactcttaggatctg |
6425033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 6289818 - 6289939
Alignment:
| Q |
80 |
tatgacattttgagatactgatttgagtatgtaaacaagaaaatctgaagactttaagtgaccaaatgattcatctcttggaagataaatatactcgctc |
179 |
Q |
| |
|
||||| || ||||||| ||||||| |||| || | ||||||| ||||||||||| |||| ||||||||||||||||||||| |||| | | || || |
|
|
| T |
6289818 |
tatgaaatcttgagatgctgatttcagtaggttatcaagaaattctgaagacttcttgtgatcaaatgattcatctcttggaatgtaaacaaagccgttc |
6289917 |
T |
|
| Q |
180 |
cgtctctcacttttaggatctg |
201 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
6289918 |
cgactctcacttttaggatctg |
6289939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 439 - 575
Target Start/End: Original strand, 6411258 - 6411394
Alignment:
| Q |
439 |
acccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctatag |
538 |
Q |
| |
|
|||||| |||||||| |||||||| ||||| || || || | |||| |||| || |||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
6411258 |
acccaaatcattgtagacatcataatcatatattctgtcccataccttacgctctccagttccatctcctcttaaagtcttcaattcttctttgatgtag |
6411357 |
T |
|
| Q |
539 |
tagactaatggagctggtgtttcacttggaaggtatg |
575 |
Q |
| |
|
|| |||||||| ||||| || |||||||||||||| |
|
|
| T |
6411358 |
tacactaatggttgtggtgcttgacttggaaggtatg |
6411394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 7460153 - 7460257
Alignment:
| Q |
97 |
ctgatttgagtatgtaaacaagaaaatctgaagactttaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtctctcacttttagg |
196 |
Q |
| |
|
|||||||||||| ||| ||||||| || || ||||| |||||||||||||||||||||||||||| |||||| || || || |||||||| ||||| |
|
|
| T |
7460153 |
ctgatttgagtacataaccaagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaacgtaaatagcgtcacttcgactctcactcttagg |
7460252 |
T |
|
| Q |
197 |
atctg |
201 |
Q |
| |
|
||||| |
|
|
| T |
7460253 |
atctg |
7460257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 7471729 - 7471794
Alignment:
| Q |
97 |
ctgatttgagtatgtaaacaagaaaatctgaagactttaagtgaccaaatgattcatctcttggaa |
162 |
Q |
| |
|
|||||||||||| ||| ||||||| || || ||||| |||||||||||||||||||||||||||| |
|
|
| T |
7471729 |
ctgatttgagtacataaccaagaaagtcagatgacttcaagtgaccaaatgattcatctcttggaa |
7471794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 570
Target Start/End: Original strand, 6458262 - 6458392
Alignment:
| Q |
440 |
cccaagtcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctatagt |
539 |
Q |
| |
|
||||| ||||| |||| |||||| ||||| | ||||| ||| ||||||| || |||||||||||||||| ||||| ||| ||||||| |||||| | |
|
|
| T |
6458262 |
cccaaatcattataaatatcataatcataaactctatccgcttctttgcgctctccagttccatctcctcttagagtctgcaactcttcttctctataat |
6458361 |
T |
|
| Q |
540 |
agactaatggagctggtgtttcacttggaag |
570 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
6458362 |
gatttaatggagctggtgtttgacttggaag |
6458392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 570
Target Start/End: Original strand, 6452175 - 6452299
Alignment:
| Q |
446 |
tcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctatagtagacta |
545 |
Q |
| |
|
||||| ||||||||||| || || |||||||| ||| ||||| | || |||||||||||||||| | ||| ||| ||||||| |||| ||| || |
|
|
| T |
6452175 |
tcattataaacatcataatcgtatatcctatcccattctttgcgttctccggttccatctcctcttagattctgcaactcttcttctctaaagtgattta |
6452274 |
T |
|
| Q |
546 |
atggagctggtgtttcacttggaag |
570 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
6452275 |
atggagctggtgtttgacttggaag |
6452299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 500 - 578
Target Start/End: Complemental strand, 9603113 - 9603035
Alignment:
| Q |
500 |
ccatctcctcttaaagtcttcaattcttcttgtctatagtagactaatggagctggtgtttcacttggaaggtatgtct |
578 |
Q |
| |
|
||||||||||||| | | | ||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
9603113 |
ccatctcctcttagattttgcaattcttcttgtctgtagtagactaatggagctggtgtttgacttggaagatatgtct |
9603035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 446 - 575
Target Start/End: Original strand, 42694397 - 42694526
Alignment:
| Q |
446 |
tcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctatagtagacta |
545 |
Q |
| |
|
|||||||| |||||||| |||||||| || || ||| ||||| | || |||||||||||||||||| | ||||||||||||| |||||| | ||||| |
|
|
| T |
42694397 |
tcattgtagacatcataatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaattgttcaattcttcttctctataatggacta |
42694496 |
T |
|
| Q |
546 |
atggagctggtgtttcacttggaaggtatg |
575 |
Q |
| |
|
||||||| ||||||||||| ||||| |||| |
|
|
| T |
42694497 |
atggagccggtgtttcactaggaagatatg |
42694526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 446 - 570
Target Start/End: Complemental strand, 42687260 - 42687136
Alignment:
| Q |
446 |
tcattgtaaacatcatagtcatagatcctatcatgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttcttgtctatagtagacta |
545 |
Q |
| |
|
|||||||| ||||| || || |||||||| |||||| |||||||| || ||||||||||| |||||| | | ||||||||||| |||||| | ||||| |
|
|
| T |
42687260 |
tcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttcttctctatacttgacta |
42687161 |
T |
|
| Q |
546 |
atggagctggtgtttcacttggaag |
570 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
42687160 |
gtggagatggtgtttcacttggaag |
42687136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 42694042 - 42694159
Alignment:
| Q |
84 |
acattttgagatactgatttgagtatgtaaacaagaaaatctgaagactttaagtgaccaaatgattcatctcttggaagataaatatactcgctccgtc |
183 |
Q |
| |
|
|||||||||||||||| ||| ||| ||| |||||||||||| || || ||||||||||| | |||||||||||||||||| | | | || |||| | |
|
|
| T |
42694042 |
acattttgagatactgctttcagtccataagtaagaaaatctgatgatttcaagtgaccaaaagcttcatctcttggaagatacacaaaatcactcctac |
42694141 |
T |
|
| Q |
184 |
tctcacttttaggatctg |
201 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
42694142 |
tctcacttttaggatctg |
42694159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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